Detail information of GWHGAAEX017637/evm.TU.scaffold_84.70
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|264680920|ref|YP_003280830.1| | 2.00E-23 | nuclear protein SET [Comamonas testosteroni CNB-2] |
| KOG | KOG1080 | 0 | Histone H3 (Lys4) methyltransferase complex, subunit SET1 and related methyltransferases |
| nr | gi|672121155|ref|XP_008783871.1| | 0 | PREDICTED: histone-lysine N-methyltransferase ATX4-like [Phoenix dactylifera] |
| Swissprot | tr|Q9SUE7|ATX4_ARATH | 0 | Histone-lysine N-methyltransferase ATX4 |
| trEMBL | tr|M0RKA5|M0RKA5_MUSAM | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr10P21800_001} |
| TAIR | AT5G53430 | 0 | SET domain group 29 |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000080 | 3657654 | 3724309 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX017637
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF00855.16 | PWWP | 139 | 235 | 3.80E-15 |
| PF00628.28 | PHD | 321 | 373 | 1.20E-07 |
| PF13831.5 | PHD_2 | 524 | 557 | 2.90E-12 |
| PF13832.5 | zf-HC5HC2H_2 | 565 | 677 | 3.20E-26 |
| PF00856.27 | SET | 807 | 912 | 1.20E-18 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | PHD |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0005515 | Molecular Function | protein binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 14.280 |
| SRR2545915 | Juvenile tuber | 14.630 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 11.980 |
| SRR5643514 | five period of Gastrodia elata | 12.350 | |
| SRR5643515 | five period of Gastrodia elata | 11.350 | |
| SRR5643524 | five period of Gastrodia elata | 11.540 | |
| SRR5643525 | five period of Gastrodia elata | 9.600 | |
| SRR5643528 | five period of Gastrodia elata | 6.830 | |
| SRR5643658 | five period of Gastrodia elata | 9.030 | |
| SRR5643659 | five period of Gastrodia elata | 7.920 | |
| SRR5643660 | five period of Gastrodia elata | 8.150 | |
| SRR5643661 | five period of Gastrodia elata | 8.380 | |
| SRR5643662 | five period of Gastrodia elata | 6.060 | |
| SRR5643663 | five period of Gastrodia elata | 5.040 | |
| SRR5643664 | five period of Gastrodia elata | 5.380 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 13.960 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 9.660 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 13.320 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 14.540 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 12.320 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 13.310 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 15.410 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 15.240 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 13.880 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 13.040 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 11.240 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 11.240 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 9.14 |
| Juven | Juvenile tuber | 11.51 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 8.47 | |
| Mother_Juven | Mother tuber of Juvenile | 10.94 |