Detail information of GWHGAAEX017639/evm.TU.scaffold_84.72
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|428219206|ref|YP_007103671.1| | 5.00E-91 | imidazoleglycerol-phosphate dehydratase [Pseudanabaena sp. PCC 7367] |
| KOG | KOG3143 | 5.00E-109 | Imidazoleglycerol-phosphate dehydratase |
| nr | gi|743758121|ref|XP_010925182.1| | 7.09E-118 | PREDICTED: imidazoleglycerol-phosphate dehydratase isoform X1 [Elaeis guineensis] |
| Swissprot | tr|P34048|HIS7_WHEAT | 4.00E-115 | Imidazoleglycerol-phosphate dehydratase (Fragment) |
| trEMBL | tr|K3Y9D4|K3Y9D4_SETIT | 3.00E-116 | Imidazoleglycerol-phosphate dehydratase {ECO:0000256|RuleBase:RU000598} |
| TAIR | AT4G14910 | 5.00E-109 | HISTIDINE BIOSYNTHESIS 5B |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000080 | 3781318 | 3815836 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX017639
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF00475.17 | IGPD | 118 | 261 | 1.00E-61 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K01693 | hisB | Metabolic pathways | map01100 |
| Biosynthesis of secondary metabolites | map01110 | ||
| Biosynthesis of amino acids | map01230 | ||
| Histidine metabolism | map00340 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0000105 | Biological Process | histidine biosynthetic process |
| GO:0004424 | Molecular Function | imidazoleglycerol-phosphate dehydratase activity |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 36.430 |
| SRR2545915 | Juvenile tuber | 33.660 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 15.500 |
| SRR5643514 | five period of Gastrodia elata | 15.040 | |
| SRR5643515 | five period of Gastrodia elata | 16.110 | |
| SRR5643524 | five period of Gastrodia elata | 14.870 | |
| SRR5643525 | five period of Gastrodia elata | 18.870 | |
| SRR5643528 | five period of Gastrodia elata | 13.770 | |
| SRR5643658 | five period of Gastrodia elata | 15.420 | |
| SRR5643659 | five period of Gastrodia elata | 20.600 | |
| SRR5643660 | five period of Gastrodia elata | 25.690 | |
| SRR5643661 | five period of Gastrodia elata | 20.350 | |
| SRR5643662 | five period of Gastrodia elata | 24.880 | |
| SRR5643663 | five period of Gastrodia elata | 27.160 | |
| SRR5643664 | five period of Gastrodia elata | 30.890 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 33.420 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 19.160 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 32.940 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 30.340 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 33.310 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 41.080 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 25.040 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 33.090 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 32.150 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 30.380 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 21.950 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 21.950 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 32.53 |
| Juven | Juvenile tuber | 18.44 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 11.57 | |
| Mother_Juven | Mother tuber of Juvenile | 13.94 |