Detail information of GWHGAAEX017642/evm.TU.scaffold_84.74
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|29346582|ref|NP_810085.1| | 3.00E-65 | DNA primase/helicase [Bacteroides thetaiotaomicron VPI-5482] |
| nr | gi|672174082|ref|XP_008807186.1| | 0 | PREDICTED: twinkle homolog protein, chloroplastic/mitochondrial-like [Phoenix dactylifera] |
| Swissprot | tr|B5X582|TWIH_ARATH | 0 | Twinkle homolog protein, chloroplastic/mitochondrial (Precursor) |
| trEMBL | tr|K4B531|K4B531_SOLLC | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:Solyc02g022830.2.1} |
| TAIR | AT1G30660 | 4.00E-83 | nucleic acid binding;nucleic acid binding |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000080 | 3865228 | 3929527 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX017642
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module1 |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF13662.5 | Toprim_4 | 284 | 374 | 1.10E-16 |
| PF03796.14 | DnaB_C | 439 | 694 | 3.70E-10 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0006260 | Biological Process | DNA replication |
| GO:0003678 | Molecular Function | DNA helicase activity |
| GO:0005524 | Molecular Function | ATP binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 44.280 |
| SRR2545915 | Juvenile tuber | 42.940 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 18.920 |
| SRR5643514 | five period of Gastrodia elata | 14.810 | |
| SRR5643515 | five period of Gastrodia elata | 15.500 | |
| SRR5643524 | five period of Gastrodia elata | 14.850 | |
| SRR5643525 | five period of Gastrodia elata | 4.200 | |
| SRR5643528 | five period of Gastrodia elata | 2.180 | |
| SRR5643658 | five period of Gastrodia elata | 2.450 | |
| SRR5643659 | five period of Gastrodia elata | 35.230 | |
| SRR5643660 | five period of Gastrodia elata | 40.470 | |
| SRR5643661 | five period of Gastrodia elata | 32.840 | |
| SRR5643662 | five period of Gastrodia elata | 34.090 | |
| SRR5643663 | five period of Gastrodia elata | 37.250 | |
| SRR5643664 | five period of Gastrodia elata | 48.750 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 31.970 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 23.210 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 25.180 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 36.950 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 22.830 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 26.950 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 29.700 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 24.040 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 18.050 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 20.970 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 19.210 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 19.210 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 50.22 |
| Juven | Juvenile tuber | 55.93 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 6.32 | |
| Mother_Juven | Mother tuber of Juvenile | 19.76 |