Gene detail

Detail information of GWHGAAEX017644/evm.TU.scaffold_84.77

Functional Annotation

Database	Orthologs	E value	Annotation
KOG	KOG3436	2.00E-41	60S ribosomal protein L35
nr	gi\|672134403\|ref\|XP_008790850.1\|	1.71E-49	PREDICTED: 50S ribosomal protein L29, chloroplastic-like [Phoenix dactylifera]
Swissprot	tr\|Q9SWI6\|RK29_MAIZE	3.00E-42	50S ribosomal protein L29, chloroplastic (Precursor)
trEMBL	tr\|M0RL30\|M0RL30_MUSAM	2.00E-48	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_Achr10P24550_001}
TAIR	AT5G65220	2.00E-41	Ribosomal L29 family protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000080	3967243	3988162	+

Transcript Sequence
>GWHTAAEX017644 GTGGGGATGTGGCTAATCCATCGAGAGTTATAAAGTTGCCAACTATAGTCTTTGAAAGGAGAAGGAGCCAACTTCTACTACTTTCTATTTGGGTGTCATAAACGTAATTAAACAAGATATTATGAGGAGCTTGGGTTGTGGTGCTGGTCAGCAATGCCCTAACCCCTTATTATAATACAACTAAATGAGTGGGTTGTTGAATGCGAATTAAAATGTGAAAAAAAGAATAAGTTGCTGAGCCGGTTATTGGAAATTAATGTGCAACATCAAGTGAGTGGGCAAGTTGTTGGAAATTAAAGTGCACCTTAAGTGTGTGGGTGAGTTGTTGGATGTGAAATAAAGAAATAATTTTGAATAAAAAAATGAGTGGGTATGTAGAAATTTTGATGAGCATTTAAGCCATAATTGCGCTAGCACTCATAAACCTGACTTCTCTATTTAGGCAAACAAAGGAGAAGCTCGGGCTGGTGCGTTCAGGCATCGAGTTCTCTATTTAGTCAAATAAAGGAGAAGTCAAGCTGACACTTGGGAGGAATCGATAGCCATATAACAAAGTTAGGCACCTGTTTGAAACTTGAATTCTACTAATCATCAAGCATAGAAGGTTGGGAGAGAATATGCTAGTAAAGAGTCTTTTCCAACTAGTTAGGAAGATATTTGAAGAACATAAGCTCAAACCATGATACCCTTGGAGATGTGGAGAGCTTTAAGAAACCTTATTATTCCTAATTTGATTTTAGATCCAACCAAACTAGTAATAGTACACAAGATCCTATTACATTAATCTTGGTGACAATGGTAGTTTTAGTTTTCTAGTCTGAACAAAAGGAAATGCGAGAACAAAAACGATTCATATTGGTCGATTCCACTTTCGTTTCCCCTACTCGCGTTGGGAAACAGTAGGGAAATTGAAGGATGGCGCTAGGTTTATCGTCACCTTCATTTCATGCCCTTTATTCCTCCCCGCGTTCCTCCTCAACCTCGCATTCAAACAAAGCATTACTCTCTCTTTCTGCTCTTTTGTCTTCATTCCACGGAATCCGAATCCGGAGCTGTGCTGTCAAGGCTCAAGGGCCATCCTTATCTTTTGCGGGTGAACGACGCAAATCGATTAATGCTGCGAAGAGGGAGATGGAGATGAAAGAACTACGAGGTCGAACTACAGAGGAGCTAAACGAGGAGGTCATCGATTTGAAGGGGGAGCTTTACATGCTCAGAGTTCAGCAGTCTATCGGTAAAAACATTAAATCCAGCGAGTTCTGGCGCATGCAGAAAAGGATTGCTCGCATGCTTACTATCAAGAGAGAGAGGGAGATTGAACAGGGAATATGCAAAAGGCTATCGAGGAAGCTCGACAAAAAATGGAGAAGGAGCATTGCTATCAGACCTCCCCCGTCTTTGCGAAAGATGCAAGAAGAAGAAGATGAACAAAGAGTAGCAGCAAGAGACTGAAATTTCTGCATAATGTTTAATCTCTGCAACTATGTACATCTATATTTTTAGTATTAGGTATGCCTTGGCCAATTGCTTCAACTATAGTTGTTCTTATTTTGAAGAAAAGCAGAATTTGAACATGGAGATGAAAATGCTTTTTATATAATGAAACAATATAGAAGTTTTTGCAGCATTAGCTCACAAAATAGTTAGATGATTTACAAATGTAAACAATTAAGGAACAAATGGCTTTAGAAAAAGCCAGCCACCAAATGGCCTACAAATACAAGCAACAACCACATATCACCAACTGTAAATGATAAAAGAAGCATGCCCAATTCACACAGGAATTCTT

Network for GWHGAAEX017644

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00831.22	Ribosomal_L29	76	132	1.40E-12

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K02904	RP-L29, rpmC	Ribosome	map03010

Gene Ontology

GO term	Ontology	Name
GO:0006412	Biological Process	translation
GO:0003735	Molecular Function	structural constituent of ribosome
GO:0005840	Cellular Component	ribosome

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	15.780
SRP064423	SRR2545915	Juvenile tuber	12.730
SRP108465	SRR5643513	five period of Gastrodia elata	6.080
	SRR5643514	five period of Gastrodia elata	7.440
	SRR5643515	five period of Gastrodia elata	7.250
	SRR5643524	five period of Gastrodia elata	5.750
	SRR5643525	five period of Gastrodia elata	9.070
	SRR5643528	five period of Gastrodia elata	5.270
	SRR5643658	five period of Gastrodia elata	5.740
	SRR5643659	five period of Gastrodia elata	7.390
	SRR5643660	five period of Gastrodia elata	9.830
	SRR5643661	five period of Gastrodia elata	10.910
	SRR5643662	five period of Gastrodia elata	8.820
	SRR5643663	five period of Gastrodia elata	8.200
	SRR5643664	five period of Gastrodia elata	7.210
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	5.230
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	1.050
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	3.600
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	4.180
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	4.620
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	4.080
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	5.640
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	4.620
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	3.610
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	3.590
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	4.250
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	4.250
SRP279888	Gastro	Gastrodia elata tuber	9.92
	Juven	Juvenile tuber	5.51
	Mother_Gastro	Mother tuber of Gastrodia elata	3.60
	Mother_Juven	Mother tuber of Juvenile	3.23