Detail information of GWHGAAEX017645/evm.TU.scaffold_84.78
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| KOG | KOG2234 | 2.00E-131 | Predicted UDP-galactose transporter |
| nr | gi|743841114|ref|XP_010937447.1| | 3.96E-173 | PREDICTED: CMP-sialic acid transporter 5 isoform X1 [Elaeis guineensis] |
| Swissprot | tr|Q8LES0|CSTR5_ARATH | 3.00E-158 | CMP-sialic acid transporter 5 |
| trEMBL | tr|A0A061DIM9|A0A061DIM9_THECC | 2.00E-171 | Nucleotide-sugar transporter family protein {ECO:0000313|EMBL:EOX92112.1} |
| TAIR | AT5G65000 | 2.00E-131 | Nucleotide-sugar transporter family protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000080 | 3989942 | 4018573 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX017645
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF04142.14 | Nuc_sug_transp | 22 | 313 | 1.20E-31 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0090481 | Biological Process | pyrimidine nucleotide-sugar transmembrane transport |
| GO:0015165 | Molecular Function | pyrimidine nucleotide-sugar transmembrane transporter activity |
| GO:0016021 | Cellular Component | integral component of membrane |
| GO:0000139 | Cellular Component | Golgi membrane |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 44.400 |
| SRR2545915 | Juvenile tuber | 46.410 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 43.040 |
| SRR5643514 | five period of Gastrodia elata | 37.040 | |
| SRR5643515 | five period of Gastrodia elata | 39.110 | |
| SRR5643524 | five period of Gastrodia elata | 39.770 | |
| SRR5643525 | five period of Gastrodia elata | 34.680 | |
| SRR5643528 | five period of Gastrodia elata | 34.600 | |
| SRR5643658 | five period of Gastrodia elata | 31.960 | |
| SRR5643659 | five period of Gastrodia elata | 36.410 | |
| SRR5643660 | five period of Gastrodia elata | 36.530 | |
| SRR5643661 | five period of Gastrodia elata | 38.380 | |
| SRR5643662 | five period of Gastrodia elata | 30.860 | |
| SRR5643663 | five period of Gastrodia elata | 33.500 | |
| SRR5643664 | five period of Gastrodia elata | 31.980 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 41.480 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 48.730 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 38.960 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 40.400 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 47.140 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 45.040 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 36.940 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 38.180 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 41.150 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 43.510 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 49.180 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 49.180 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 52.73 |
| Juven | Juvenile tuber | 71.55 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 49.96 | |
| Mother_Juven | Mother tuber of Juvenile | 53.30 |