Detail information of GWHGAAEX017656/evm.TU.scaffold_85.2


Functional Annotation

DatabaseOrthologsE valueAnnotation
KOGKOG41977.00E-07FOG: PPR repeat
nrgi|672166551|ref|XP_008803207.1|2.57E-16PREDICTED: pentatricopeptide repeat-containing protein At1g62910-like [Phoenix dactylifera]
Swissprottr|Q3ECK2|PPR92_ARATH2.00E-07Pentatricopeptide repeat-containing protein At1g62680, mitochondrial (Precursor)
trEMBLtr|S8D563|S8D563_9LAMI7.00E-08Uncharacterized protein {ECO:0000313|EMBL:EPS74565.1} (Fragment)
TAIRAT1G626807.00E-07Pentatricopeptide repeat (PPR) superfamily protein

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX000000836539765606+
Transcript Sequence

Network for GWHGAAEX017656

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation
Module9

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF13812.5PPR_31561.20E-05
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0005515Molecular Functionprotein binding

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms13.010
SRR2545915Juvenile tuber1.850
SRP108465SRR5643513five period of Gastrodia elata6.350
SRR5643514five period of Gastrodia elata6.340
SRR5643515five period of Gastrodia elata0.000
SRR5643524five period of Gastrodia elata21.640
SRR5643525five period of Gastrodia elata21.480
SRR5643528five period of Gastrodia elata0.000
SRR5643658five period of Gastrodia elata0.000
SRR5643659five period of Gastrodia elata4.860
SRR5643660five period of Gastrodia elata12.890
SRR5643661five period of Gastrodia elata5.740
SRR5643662five period of Gastrodia elata7.770
SRR5643663five period of Gastrodia elata0.000
SRR5643664five period of Gastrodia elata11.960
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_142.530
SRR6049655Rhizomagastrodiae_C368-T10_good_131.660
SRR6049656Rhizomagastrodiae_C368-T07_good_112.300
SRR6049657Rhizomagastrodiae_C368-T07_good_116.350
SRR6049658Rhizomagastrodiae_C368-T04_good_131.500
SRR6049659Rhizomagastrodiae_C368-T04_good_112.840
SRR6049660Rhizomagastrodiae_C368-T01_good_146.790
SRR6049661Rhizomagastrodiae_C368-T04_good_138.010
SRR6049662Rhizomagastrodiae_C368-T01_good_128.940
SRR6049663Rhizomagastrodiae_C368-T01_good_133.220
SRR6049664Rhizomagastrodiae_C368-T10_good_117.830
SRR6049665Rhizomagastrodiae_C368-T10_good_117.830
SRP279888GastroGastrodia elata tuber 214.87
JuvenJuvenile tuber23.90
Mother_GastroMother tuber of Gastrodia elata 85.18
Mother_JuvenMother tuber of Juvenile 0.00