Gene detail

Detail information of GWHGAAEX017672/evm.TU.scaffold_85.43

Functional Annotation

Database	Orthologs	E value	Annotation
nr	gi\|672171758\|ref\|XP_008805954.1\|	7.49E-142	PREDICTED: protein WRKY1-like isoform X1 [Phoenix dactylifera]
Swissprot	tr\|Q93WU6\|WRK74_ARATH	6.00E-95	Probable WRKY transcription factor 74
trEMBL	tr\|F6HVI7\|F6HVI7_VITVI	9.00E-121	Putative uncharacterized protein {ECO:0000313\|EMBL:CCB58700.1}
TAIR	AT5G28650	2.00E-94	WRKY DNA-binding protein 74

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000083	2836963	2840751	-

Transcript Sequence
>GWHTAAEX017672 AATGCTTACAATGTGAGAATTTCCATTCCGTCTGGTCTTCGCCCGCACACCTCCCAAGCTCCAACCTCCCGGCATTCATGGCAATAGTCTTTTCCTAGGGTTTATTTTTCCCGTATTAGAGGTTGGTTACTGGGCTTTAACCGCCCCCTCCTCTCTCCTCTCTCCTCTCCCCTCTCCCCTCTCCGCAATCGATTTCTTGCGGCCTTTTTTTAAAACAAAATTTTTAGATAATACAGATTCTCTTCTGATTATTTTGCATACTGGGATATTGAAGATCTCGCTCCTGAGTAAATTTTTAGGGTTTTTGATGAACTTATTAGCCTTTAATGAATCGATTATCGCTTTTATTTTTTTGATTGACCGAAAGAAAGAGTTCTCTTCTACTTGCGCCGCTGAATATTTGGGGCTTTGGTGAAAAATTTGAGATAGTGGGACTTCGGATGGAGGAGGTGGAAGCGGCAAACAGGGCAGCCGTGGAAAGTGGTCACAGAGTCCTTAACTTACTTACTTCCAAGGTCGAAGACGAAGTCCAGCAGAGACGAAATGTTGTGGCGGAGACTGGGGAAGCAGTTTCCAGATTTAGAAAGCTATCGGCTTTGCTTGGGAGTGGTGTAGGACACGCCCGGGTGAGGAGGGCAAAGTTTTCTTCACTAAACACTTCATTCAATCACCAGAATTTCCTCGTTGATTCCACATTAGCTGCAAAAGCCAGTACCAGTACCAATTTCTCACCGGGAACGGGGGATTTGGATCGAAAGATCTTTATTGAGAACAAGGCGATGATCTCTGCGCTGAATCCTAGCCAACTGTCCACACCGTTTCAATACCTTAAGCAGCAGCAACAGCAGCCTCAGAATCATGCTTTCCAGCTTCAGCAGCACATGAAGTTCCAGGCTGAAATGCTAAGACGAGGAAATAGCGGTGGCATAAACCTCAAGTTTGATACTCCTAGTTGCTCGCAGGCCATGTCTTCGACAACACGATCGTTTTTGTCATCTCTGAGCATGGATGCGAGTGGGAGTGTTTCTGGTTTAGATGGAAAATCATTCCATTTGATTGGCGGTCCGCAGTTGTCGGAGCCCTCCAATCTGCACTCAAATCCTCGGAAGAGGTGCACGGGAAGAGGTGAGGATGGGAGTGGAAAATGTTCTAGCAGTGGAAGATGTCATTGCTCTAAAAAAAGGAAGATGCGAGTAAAGAGATCTATTAAGGTTCCAGCCATTAGCAATAAGCTAGCTGACATACCTCCTGATGAGTATTCTTGGAGGAAGTATGGGCAGAAACCAATTAAGGGATCTCCTCATCCTAGGGGATACTATAAATGCAGCAGTATGAGGGGCTGTCCAGCAAGGAAGCATGTGGAGAGGTGTTTGGAAGATCCTTCCATGCTTATTGTTACATATGAAGGCGAGCACAACCATGCCAGGCTTATGACTCAGTCTGCTCAAACCTAAAGTCCCTCGGACCCATTTTAAAATCTTCATATTCAAACACTTTTGGCTGCCTTAACATAATCGCCTGTTTCCAGTCTACCAAGCAGTCGCTGTTGTTGATTTTGTGAGGCAATTTCGGGCGGGCTCTCTTTTAGTGAGAATTAACAAAGAAAATGTAAGAACTCGATCTTTGAATGATGATTTTATTCTGTTTTCTTAATCTCTAGCATTCATCTGCCCTCTCAATGCAGTTCAACCGCAATTTTCAATTGATACAAGCTATGTAGAATGATTTATTTGAACATTTCTTTTTTATTGGAAAAATATTTTGAAGTTTTAT

Network for GWHGAAEX017672

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF10533.8	Plant_zn_clust	222	267	3.50E-19
PF03106.14	WRKY	271	327	1.80E-27

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	WRKY

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0043565	Molecular Function	sequence-specific DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	29.730
SRP064423	SRR2545915	Juvenile tuber	20.880
SRP108465	SRR5643513	five period of Gastrodia elata	45.700
	SRR5643514	five period of Gastrodia elata	39.470
	SRR5643515	five period of Gastrodia elata	36.590
	SRR5643524	five period of Gastrodia elata	34.220
	SRR5643525	five period of Gastrodia elata	21.850
	SRR5643528	five period of Gastrodia elata	24.640
	SRR5643658	five period of Gastrodia elata	21.470
	SRR5643659	five period of Gastrodia elata	31.410
	SRR5643660	five period of Gastrodia elata	29.720
	SRR5643661	five period of Gastrodia elata	30.770
	SRR5643662	five period of Gastrodia elata	34.290
	SRR5643663	five period of Gastrodia elata	28.510
	SRR5643664	five period of Gastrodia elata	28.330
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	39.830
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	51.450
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	45.580
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	47.630
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	45.630
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	43.630
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	56.970
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	46.880
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	55.130
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	53.960
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	49.690
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	49.690
SRP279888	Gastro	Gastrodia elata tuber	24.81
	Juven	Juvenile tuber	50.68
	Mother_Gastro	Mother tuber of Gastrodia elata	38.44
	Mother_Juven	Mother tuber of Juvenile	38.75