Gene detail

Detail information of GWHGAAEX017674/CADD01377.1.gene

Functional Annotation

Database	Orthologs	E value	Annotation
nr	gi\|721671673\|ref\|XP_010236847.1\|	0	PREDICTED: protein FAR1-RELATED SEQUENCE 6-like [Brachypodium distachyon]
Swissprot	tr\|Q9SSQ4\|FRS6_ARATH	4.00E-121	Protein FAR1-RELATED SEQUENCE 6
trEMBL	tr\|W4ZZ07\|W4ZZ07_WHEAT	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:Traes_1AS_F08B3720F.2}
TAIR	AT1G52520	1.00E-120	FAR1-related sequence 6

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000083	3247272	3249283	-

Transcript Sequence
>GWHTAAEX017674 TTGCATGATAAAGCAAGTGCCCCACAAAGTATGGACGAAGAACCAAATTTTGAACCAAGTACTAATCAAACGATTGTACATGAACAGTCAAAAAAAATATACACAAAATTTTATTCTAGTGATGATGAGGTTGATGAGCCAGCAGTTGGGATGTTATTTGAATCATATGAAAAATTATTTGGGTTTTACAAAAAATATGCTAGTACACAGGGCTTTGGCATAGTTGTTATAAAGTCATGGTTTACTGACGGGATATGTAGACGTGTTGATATTGGTTGCTGCAAGGGGGGGATAGGATCCACTACTTGGCAATCAACCTTAAAGAATCCAATAGTGAAAACTGGTTGTCCTGTAAAGGTTGTAGCCAGATGATGGCAACGAAAAAATCTTATATTAGCAAAAGTGTTAACTGAGCATAATCACACTCTTAGCCCCTCGAAGGCTAGATTTTTTAAATGCAATAGAAAACTTCCAATGCATATTAAAAGAAGGCTAGAATTAAATGATGATGCTGGAATCAGACTTCATGATTCTTTTAGGTCTTTTGTTGTTGGTGAAGGGGGGCATGAAAATATAACATTTGGACAAAAAGAATGCAGAAATTATGTTGATAAACATCGAAGATTAGCACTGAAGGATGGGGATGCTGTGGCACTACTAGATTATTTCTCATACATGCAGCAAAAAGATCCAAATTTCTTTTATTTGATTGATGTTGGCCAATAATATCATATTCGAAATATTTTTTGGGCTGATTCAAGATGTCGATCGGCATATCAAATCTTTTGTGATGTCGTTACTTTTGACACCACATATCTCACTAATAAGTATGATATGCCGTTTGCACCTTTTGTTGGTGTTAATCACCACGGACAATCAATTCTGTTTGGCTATGGCTTACTTTCTAGTGAGACTACCGAGAATTATATTTGGTTATTCGAGACTTGGCTATTTTGTATGCGAGGGAAGCCGCCTAATGCTATTATAACAGATCAATGTGCTGCGATTCAAAGTGCGATTGAGATAGTACTTCCTAATAGTTAGCACAGGCTTTGTCTATGGCATATAATGAAAAAAATACCAGAAAAATTAGGCAGTTTGAGAGAATACAAAAGTATTAAGAAAGCTTTGAAAACAATAGTGTATAATTCATTGAACATTATTGAATTTGAAAAGAGTTGGAATAAAATGTGTGTTGATTATGATCTCGAGCATCACAAATGGTTGAGTTCATTGTATGAACGAAGATCTGCTTGGGTTCCCGTCTTTCTGTGTGACACATTTTGGGCGGGCATGTCAACCACCCAAAGAAGTGAGAGCATGAATTCTTTCTTTGATTGTTACATTAATTCAAGAACTTCTTTGCGCCAATTTGTAAATAAATACGAACTTGCACTAAAAGATAAGATTGAGAAGGAGACTAAAGCAGATTTTGAATCATTTCATAAGAATGCAAAGCTTCTTACAAATTTGCCAATGGAGGCAACCGTGGCAAATTTATATACGCTCAATATGTTCAAACGTTTTCAGGAGGATCTCAGGGCTACAATTAATTGTATTGTCACATCAATATCAACTGAAAGCACATTATGTATAGTTAAAATTTTGGAATGCAATTTTTCACAGATACCAAATGATATCTCTACATCATGGGAGAGGATATATGAGGTACTTTTTGACAAATGCAATAATCATGTCAGCTGTATTTTCCATGGGTTTAATTTTAGGGGGATTCTATGCTGGCATGCACTCTTAACTTTAAAAGTCAATCATGTGTATGAAATTCCAACTGAATACATTCTTGATCGATGGCGCAAGGATTTTAAGAGGTTCAATGCACGTAAAGAACATCAACACCCTCATCCAATTGTAACAGAAATTGACAGATATGATGCATTCAATAACTTGAGCTTAGAGATTGCGGAG

Network for GWHGAAEX017674

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF03101.14	FAR1	62	143	1.10E-09
PF10551.8	MULE	263	356	1.30E-31

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	FAR1

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	0.040
SRP064423	SRR2545915	Juvenile tuber	0.130
SRP108465	SRR5643513	five period of Gastrodia elata	0.410
	SRR5643514	five period of Gastrodia elata	0.460
	SRR5643515	five period of Gastrodia elata	0.310
	SRR5643524	five period of Gastrodia elata	0.380
	SRR5643525	five period of Gastrodia elata	0.390
	SRR5643528	five period of Gastrodia elata	0.080
	SRR5643658	five period of Gastrodia elata	0.160
	SRR5643659	five period of Gastrodia elata	0.000
	SRR5643660	five period of Gastrodia elata	0.070
	SRR5643661	five period of Gastrodia elata	0.000
	SRR5643662	five period of Gastrodia elata	0.000
	SRR5643663	five period of Gastrodia elata	0.000
	SRR5643664	five period of Gastrodia elata	0.000
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	0.070
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	0.200
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	0.090
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	0.050
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	0.000
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	0.000
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	0.030
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	0.000
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	0.110
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	0.000
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	0.180
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	0.180
SRP279888	Gastro	Gastrodia elata tuber	0.01
	Juven	Juvenile tuber	0.07
	Mother_Gastro	Mother tuber of Gastrodia elata	0.33
	Mother_Juven	Mother tuber of Juvenile	0.12