Detail information of GWHGAAEX017676/evm.TU.scaffold_85.58
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|219850280|ref|YP_002464713.1| | 1.00E-87 | glycoside hydrolase family protein [Chloroflexus aggregans DSM 9485] |
| nr | gi|743883503|ref|XP_010909434.1| | 0 | PREDICTED: endoglucanase 23-like [Elaeis guineensis] |
| Swissprot | tr|Q69NF5|GUN23_ORYSJ | 0 | Endoglucanase 23 (Precursor) |
| trEMBL | tr|C5X662|C5X662_SORBI | 0 | Endoglucanase {ECO:0000256|RuleBase:RU361166} |
| TAIR | AT4G39010 | 0 | glycosyl hydrolase 9B18 |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000083 | 3790471 | 3792582 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX017676
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF00759.18 | Glyco_hydro_9 | 28 | 484 | 2.60E-131 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| Carbohydrate-Active enzymes Family | GH9 |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K01179 | E3.2.1.4 | Metabolic pathways | map01100 |
| Starch and sucrose metabolism | map00500 | ||
| Two-component system | map02020 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0005975 | Biological Process | carbohydrate metabolic process |
| GO:0004553 | Molecular Function | hydrolase activity, hydrolyzing O-glycosyl compounds |
| GO:0003824 | Molecular Function | catalytic activity |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 0.000 |
| SRR2545915 | Juvenile tuber | 0.000 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 0.460 |
| SRR5643514 | five period of Gastrodia elata | 1.130 | |
| SRR5643515 | five period of Gastrodia elata | 0.660 | |
| SRR5643524 | five period of Gastrodia elata | 0.800 | |
| SRR5643525 | five period of Gastrodia elata | 0.200 | |
| SRR5643528 | five period of Gastrodia elata | 0.660 | |
| SRR5643658 | five period of Gastrodia elata | 0.120 | |
| SRR5643659 | five period of Gastrodia elata | 0.120 | |
| SRR5643660 | five period of Gastrodia elata | 0.320 | |
| SRR5643661 | five period of Gastrodia elata | 0.180 | |
| SRR5643662 | five period of Gastrodia elata | 0.360 | |
| SRR5643663 | five period of Gastrodia elata | 0.240 | |
| SRR5643664 | five period of Gastrodia elata | 0.170 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 0.780 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 0.000 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 1.080 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 0.990 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 1.270 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 0.550 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 2.210 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 1.630 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 5.570 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 4.560 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 1.320 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 1.320 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 0.09 |
| Juven | Juvenile tuber | 0.18 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 0.15 | |
| Mother_Juven | Mother tuber of Juvenile | 0.07 |