Detail information of GWHGAAEX017677/evm.TU.scaffold_85.62


Functional Annotation

DatabaseOrthologsE valueAnnotation
nrgi|672187786|ref|XP_008813420.1|7.35E-126PREDICTED: F-box protein SKIP5 [Phoenix dactylifera]
Swissprottr|Q94FT2|SKIP5_ARATH5.00E-110F-box protein SKIP5
trEMBLtr|K3ZVG9|K3ZVG9_SETIT5.00E-125Uncharacterized protein {ECO:0000313|EnsemblPlants:Si030600m}
TAIRAT3G544803.00E-82SKP1/ASK-interacting protein 5

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000008341287534157463+
Transcript Sequence

Network for GWHGAAEX017677

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF12937.6F-box-like49861.70E-08
Protein Sequence

Gene family

Gene familysubfamily
Ubiquitin FamilyF-box

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0005515Molecular Functionprotein binding

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms30.950
SRR2545915Juvenile tuber27.040
SRP108465SRR5643513five period of Gastrodia elata28.720
SRR5643514five period of Gastrodia elata30.070
SRR5643515five period of Gastrodia elata31.300
SRR5643524five period of Gastrodia elata28.800
SRR5643525five period of Gastrodia elata31.830
SRR5643528five period of Gastrodia elata22.610
SRR5643658five period of Gastrodia elata32.870
SRR5643659five period of Gastrodia elata29.950
SRR5643660five period of Gastrodia elata28.330
SRR5643661five period of Gastrodia elata27.200
SRR5643662five period of Gastrodia elata31.000
SRR5643663five period of Gastrodia elata34.600
SRR5643664five period of Gastrodia elata36.990
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_127.320
SRR6049655Rhizomagastrodiae_C368-T10_good_134.860
SRR6049656Rhizomagastrodiae_C368-T07_good_125.120
SRR6049657Rhizomagastrodiae_C368-T07_good_133.430
SRR6049658Rhizomagastrodiae_C368-T04_good_132.480
SRR6049659Rhizomagastrodiae_C368-T04_good_134.950
SRR6049660Rhizomagastrodiae_C368-T01_good_129.310
SRR6049661Rhizomagastrodiae_C368-T04_good_132.570
SRR6049662Rhizomagastrodiae_C368-T01_good_124.260
SRR6049663Rhizomagastrodiae_C368-T01_good_125.000
SRR6049664Rhizomagastrodiae_C368-T10_good_126.420
SRR6049665Rhizomagastrodiae_C368-T10_good_126.420
SRP279888GastroGastrodia elata tuber 36.92
JuvenJuvenile tuber41.43
Mother_GastroMother tuber of Gastrodia elata 37.57
Mother_JuvenMother tuber of Juvenile 39.89