Gene detail

Detail information of GWHGAAEX017684/evm.TU.scaffold_85.76

Functional Annotation

Database	Orthologs	E value	Annotation
KOG	KOG1075	5.00E-25	FOG: Reverse transcriptase
nr	gi\|698518765\|ref\|XP_009804250.1\|	1.92E-29	PREDICTED: uncharacterized protein LOC104249509 [Nicotiana sylvestris]
trEMBL	tr\|A0A067DI07\|A0A067DI07_CITSI	8.00E-26	Uncharacterized protein {ECO:0000313\|EMBL:KDO38231.1}
TAIR	AT4G15600	5.00E-25	Unannotated protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000083	4389077	4391500	+

Transcript Sequence
>GWHTAAEX017684 ATGACTTTTCAATCCTCTCCCCCTTGGAGGAGGCTTGGCTATTGTAGGGGAACCTCTTGGCTTGTTAAGGAATGCTCAAGGAAATCTTCCTCGGGTCTTGTGGCGGCCAAAGCAGTGGCGGTCGCCATCGCTGCAGCCCGTTCAAAGGGGAAGGAGGTGCCGCACGGTTTGGCTTTCCCCTTGGCCGACCATGGGCTTGCTGGTGTTGGAGGGGCGTCTAGCTCTAAGGTGGCCCCATCGAGTGTTGCGACCGACTTGGCCCCTGCCGTGGTGTCGGCCTGCTTGGGGGAGCCGAAGGCGGCCTCTTCTCCTCCTCCGTCTAAAGCTGGTTTGGCGTCTTCCTTGGACGAGCTGGGCGCTTGGAGAAATGAAGTCTCCTCTTCTCCAAAGGAAGGGACTTTTCCCTTTGCGGAGGTGCCTGCCTCCAGCTTGGCCGATCGAGTCTCACCCTCGGAGGAAGGATCTGCTTCTAGTTCTTCCTCTAAAGCTAGGATGAAGGAGACTGAACGTGACGGCTTGGTAATCGGGCTCCCGGCCCCTCAGCCATCTTCCCCACCACCCGACATCCCCCGCGAGGCTAGTGGACTGCTTCGTTACTTGGCAACAAGGTCACCGCCTTCAAGCAATACAGCCGACAACATAAAAAAAATGCCTGACACTAGTGCTCCAGGTTTGGTTTCGTTGGTTAATGGCTTAAATGTTCTTGATCCTGTGCTTGTGGTTGACCCTTTGCTGGTAAAGGAGGTTCAGCCAGCCACTATTTCAATTTGTGTAAATGCTTTACTTGAGGTCGTGTCCCAACCACCGTTGGGCATGAACAACCCAGCCATACATGAAAAATCTGCGGCTTGGATTAAGCCTCAACCCTTTCCTTGCGCTCCGGTGGAGGCACATAATCTGTGTTTTGGATCGAATGGTGAAGTCATTATGGATGAGGCAGATGTTTTACAGCTCCGCTCTGAACTCACGGGCTCCATCATTATTCGATTATTTGGGCGACAAATTCCTTTTGCTATCATTTCAAACGAACTTAATTTAAGATGGGGAAAGTTTGGCAACTTCACCCTCCAAGCAATCGAGGCTGATTGCTTGCTTGTAATGTTTACAAATGATGCAGCTAGCGAACAAGTTCTCATGGGCGGACCATGGTATATCGGCGGACAAGTCCTTGGAAAGGCACGTTGGGTGCCAAATTTTTCTCCGAGCATGAATGTGGGGTGGTCCACCCCAGTGTGGATTCGCTTGCTGGGTTTACCATTGGATCTCTGGAGTACCAAGAACCTTTCCCAACTTGCTTTGAAGATTGGAAGGCCAATCTGTATTGATGCGCTCACAGCAAATAGAGAAAGGTGCGCTTTTGCACATATTTGTGTTGAAATCAACCTCCAAGAACCCCTCATCGCATCTATCCAGATCCGTAATATTGATGCGACGTTGACTCAGCAAGTTTTGTACGAAGGCTTCTCCTTATTCTGTAACTACTGTCGGCGTATTGGGCACAAGGACTGCTCATCCAGAGCTCAGGTAAACCCAGTTCCAGTACCCACCAGCGCAGCGATTGTTCAGTCCGAACCTAGCAGCACTGATTGGATACTGGTTCAAAGGCAGAAGCGTGCAACAAATGTACCTCGTCCTCGTTCCCGTTCGAGACCGGCACGCCCCTGCAGGGCTAGATCCCGGCCTGCAAGCCTTGGAGAGGCCAGACCACGATCAAGGGTGGCTAGAACCCAAATCTGGTCGGGTCCGGTGCAACCTGCTTCAAGCACACAAGTTCATGCAACAGTGGACGCCAGTCCTTCTCAGTCAGCATTTAATTCCAGCCATTTGATGCAGTTTTCAAAGCCTGCACCCAGTTTTTTTAATAGTTCCTTGGCCCCTAGTAGCCAACCAGCTCTCTCCACGCCACCTGGCCCCGCCGAAAAACTGGCTCAGTGCATGGATAAGTCTTTTCAGGCGGACACCATAGCTGTTAATAGCACTCCTCTTTCAGCGCTTCACGACAATTCGCCTGACAGCTGCTTTAAAGCCAGCGAATCCCTGCCTGCCAGCTTGCCTACAACCTGCCGCATAGCGTGCTTGGTGCCCGATAGCCCTTTAGGTCCGCTTCCCGCTAACGGCTTGGCTTCCGCACTCCTTCTGCACGCCGACAACGCATTGGACAGCGACCGCCCAGTTAACGTGTCGCCTTCCTTTCTGCCTGACGCCATCCCTGTTGTGGACCCACCATCCCAGTTCCTGCCTCTTCCTTTGCTTACACCTGATGTGGCCCTCCCAACGGCCAACACGTCAGCTCCCCGCCCCTTTTCGGACACAGGTTATGCGCACGCCCAGACCACTTCCTCTCAGCACATGATGGTGGGTCAAGGCATGCCTCAACATGCAATTTTGCCGCCAGCTTTTTTCGCCCCCCCCCCACCCAGCTGA

Network for GWHGAAEX017684

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF14111.5	DUF4283	319	458	2.20E-30

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	0.120
SRP064423	SRR2545915	Juvenile tuber	0.070
SRP108465	SRR5643513	five period of Gastrodia elata	1.750
	SRR5643514	five period of Gastrodia elata	1.110
	SRR5643515	five period of Gastrodia elata	0.390
	SRR5643524	five period of Gastrodia elata	0.290
	SRR5643525	five period of Gastrodia elata	0.180
	SRR5643528	five period of Gastrodia elata	0.000
	SRR5643658	five period of Gastrodia elata	0.100
	SRR5643659	five period of Gastrodia elata	0.160
	SRR5643660	five period of Gastrodia elata	0.030
	SRR5643661	five period of Gastrodia elata	0.090
	SRR5643662	five period of Gastrodia elata	0.030
	SRR5643663	five period of Gastrodia elata	0.040
	SRR5643664	five period of Gastrodia elata	0.340
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	0.940
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	1.270
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	1.090
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	0.570
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	0.000
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	0.060
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	0.570
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	0.000
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	0.460
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	0.080
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	1.020
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	1.020
SRP279888	Gastro	Gastrodia elata tuber	0.03
	Juven	Juvenile tuber	0.02
	Mother_Gastro	Mother tuber of Gastrodia elata	0.18
	Mother_Juven	Mother tuber of Juvenile	0.04