Detail information of GWHGAAEX017689/evm.TU.scaffold_86.4


Functional Annotation

DatabaseOrthologsE valueAnnotation
COGgi|296132245|ref|YP_003639492.1|9.00E-111phosphomethylpyrimidine kinase [Thermincola potens JR]
KOGKOG25980Phosphomethylpyrimidine kinase
nrgi|672126161|ref|XP_008786520.1|0PREDICTED: probable thiamine biosynthetic bifunctional enzyme, chloroplastic isoform X2 [Phoenix dactylifera]
Swissprottr|Q2QWK9|TPS1_ORYSJ0Hydroxymethylpyrimidine kinase (Precursor)
trEMBLtr|G7INQ6|G7INQ6_MEDTR0Thiamine-phosphate pyrophosphorylase {ECO:0000313|EMBL:AES63234.1}
TAIRAT1G229400thiamin biosynthesis protein, putative

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX00000081506135554345-
Transcript Sequence

Network for GWHGAAEX017689

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF08543.11Phos_pyr_kin292731.40E-84
PF02581.16TMP-TENI3044892.00E-65
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K14153thiDE Metabolic pathways map01100
Thiamine metabolismmap00730

Gene Ontology

GO term OntologyName
GO:0009228Biological Processthiamine biosynthetic process
GO:0004789Molecular Functionthiamine-phosphate diphosphorylase activity
GO:0003824Molecular Functioncatalytic activity
GO:0008972Molecular Functionphosphomethylpyrimidine kinase activity

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms8.620
SRR2545915Juvenile tuber17.520
SRP108465SRR5643513five period of Gastrodia elata32.990
SRR5643514five period of Gastrodia elata44.960
SRR5643515five period of Gastrodia elata34.020
SRR5643524five period of Gastrodia elata38.260
SRR5643525five period of Gastrodia elata15.090
SRR5643528five period of Gastrodia elata12.350
SRR5643658five period of Gastrodia elata12.250
SRR5643659five period of Gastrodia elata24.600
SRR5643660five period of Gastrodia elata24.070
SRR5643661five period of Gastrodia elata25.210
SRR5643662five period of Gastrodia elata24.160
SRR5643663five period of Gastrodia elata24.280
SRR5643664five period of Gastrodia elata24.320
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_144.240
SRR6049655Rhizomagastrodiae_C368-T10_good_138.000
SRR6049656Rhizomagastrodiae_C368-T07_good_146.130
SRR6049657Rhizomagastrodiae_C368-T07_good_136.940
SRR6049658Rhizomagastrodiae_C368-T04_good_130.310
SRR6049659Rhizomagastrodiae_C368-T04_good_126.700
SRR6049660Rhizomagastrodiae_C368-T01_good_135.070
SRR6049661Rhizomagastrodiae_C368-T04_good_136.500
SRR6049662Rhizomagastrodiae_C368-T01_good_146.360
SRR6049663Rhizomagastrodiae_C368-T01_good_135.980
SRR6049664Rhizomagastrodiae_C368-T10_good_152.240
SRR6049665Rhizomagastrodiae_C368-T10_good_152.240
SRP279888GastroGastrodia elata tuber 18.78
JuvenJuvenile tuber15.60
Mother_GastroMother tuber of Gastrodia elata 12.82
Mother_JuvenMother tuber of Juvenile 11.65