Detail information of GWHGAAEX017690/evm.TU.scaffold_86.5
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|434398859|ref|YP_007132863.1| | 2.00E-46 | Queuine tRNA-ribosyltransferase [Stanieria cyanosphaera PCC 7437] |
| KOG | KOG3909 | 7.00E-59 | Queuine-tRNA ribosyltransferase |
| nr | gi|672117588|ref|XP_008781985.1| | 0 | PREDICTED: queuine tRNA-ribosyltransferase subunit QTRTD1-like isoform X1 [Phoenix dactylifera] |
| trEMBL | tr|M0RRP6|M0RRP6_MUSAM | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr11P12660_001} |
| TAIR | HS13375872 | 7.00E-59 | Unannotated protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000081 | 593809 | 623984 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX017690
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF01702.17 | TGT | 130 | 381 | 4.40E-66 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0006400 | Biological Process | tRNA modification |
| GO:0008479 | Molecular Function | queuine tRNA-ribosyltransferase activity |
| GO:0016763 | Molecular Function | transferase activity, transferring pentosyl groups |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 25.210 |
| SRR2545915 | Juvenile tuber | 26.060 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 14.040 |
| SRR5643514 | five period of Gastrodia elata | 15.360 | |
| SRR5643515 | five period of Gastrodia elata | 15.630 | |
| SRR5643524 | five period of Gastrodia elata | 14.750 | |
| SRR5643525 | five period of Gastrodia elata | 8.860 | |
| SRR5643528 | five period of Gastrodia elata | 7.610 | |
| SRR5643658 | five period of Gastrodia elata | 8.100 | |
| SRR5643659 | five period of Gastrodia elata | 12.360 | |
| SRR5643660 | five period of Gastrodia elata | 13.910 | |
| SRR5643661 | five period of Gastrodia elata | 13.740 | |
| SRR5643662 | five period of Gastrodia elata | 11.590 | |
| SRR5643663 | five period of Gastrodia elata | 10.440 | |
| SRR5643664 | five period of Gastrodia elata | 10.810 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 20.100 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 13.270 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 15.780 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 18.800 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 16.250 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 18.100 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 17.510 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 18.850 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 18.690 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 17.590 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 17.610 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 17.610 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 10.68 |
| Juven | Juvenile tuber | 9.10 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 4.75 | |
| Mother_Juven | Mother tuber of Juvenile | 5.96 |