Detail information of GWHGAAEX017693/evm.TU.scaffold_86.10


Functional Annotation

DatabaseOrthologsE valueAnnotation
KOGKOG13277.00E-157Copine
nrgi|743816709|ref|XP_010930718.1|0PREDICTED: E3 ubiquitin-protein ligase RGLG1-like [Elaeis guineensis]
Swissprottr|Q9SS90|RGLG1_ARATH2.00E-147E3 ubiquitin-protein ligase RGLG1
trEMBLtr|M0RGW4|M0RGW4_MUSAM0Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr10P09880_001}
TAIRAT5G639707.00E-157Copine (Calcium-dependent phospholipid-binding protein) family

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX00000081732788775344+
Transcript Sequence

Network for GWHGAAEX017693

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF07002.15Copine602747.60E-69
PF13920.5zf-C3HC4_33133511.10E-09
Protein Sequence

Gene family

Gene familysubfamily
Ubiquitin FamilyRING

KEGG pathway

KO Enzyme pathway mapID
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Gene Ontology

GO term OntologyName

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms22.400
SRR2545915Juvenile tuber20.930
SRP108465SRR5643513five period of Gastrodia elata19.410
SRR5643514five period of Gastrodia elata16.950
SRR5643515five period of Gastrodia elata15.200
SRR5643524five period of Gastrodia elata18.710
SRR5643525five period of Gastrodia elata14.230
SRR5643528five period of Gastrodia elata17.580
SRR5643658five period of Gastrodia elata18.420
SRR5643659five period of Gastrodia elata17.600
SRR5643660five period of Gastrodia elata18.720
SRR5643661five period of Gastrodia elata14.280
SRR5643662five period of Gastrodia elata16.780
SRR5643663five period of Gastrodia elata18.410
SRR5643664five period of Gastrodia elata17.420
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_126.150
SRR6049655Rhizomagastrodiae_C368-T10_good_124.700
SRR6049656Rhizomagastrodiae_C368-T07_good_129.580
SRR6049657Rhizomagastrodiae_C368-T07_good_124.550
SRR6049658Rhizomagastrodiae_C368-T04_good_133.330
SRR6049659Rhizomagastrodiae_C368-T04_good_139.150
SRR6049660Rhizomagastrodiae_C368-T01_good_130.160
SRR6049661Rhizomagastrodiae_C368-T04_good_131.960
SRR6049662Rhizomagastrodiae_C368-T01_good_131.530
SRR6049663Rhizomagastrodiae_C368-T01_good_135.020
SRR6049664Rhizomagastrodiae_C368-T10_good_135.410
SRR6049665Rhizomagastrodiae_C368-T10_good_135.410
SRP279888GastroGastrodia elata tuber 14.50
JuvenJuvenile tuber12.21
Mother_GastroMother tuber of Gastrodia elata 9.25
Mother_JuvenMother tuber of Juvenile 9.55