Gene detail

Database	Orthologs	E value	Annotation
COG	gi\|289597064\|ref\|YP_003483760.1\|	1.00E-10	Like-Sm ribonucleoprotein core [Aciduliprofundum boonei T469]
KOG	KOG3460	3.00E-57	Small nuclear ribonucleoprotein (snRNP) LSM3
nr	gi\|720015745\|ref\|XP_010260936.1\|	1.49E-61	PREDICTED: U6 snRNA-associated Sm-like protein LSm3 [Nelumbo nucifera]
Swissprot	tr\|Q9C6K5\|LSM3B_ARATH	9.00E-58	Sm-like protein LSM3B {ECO:0000305}
trEMBL	tr\|A0A067L8E8\|A0A067L8E8_JATCU	9.00E-62	Uncharacterized protein {ECO:0000313\|EMBL:KDP40389.1}
TAIR	AT1G76860	3.00E-57	Small nuclear ribonucleoprotein family protein

Scaffold	Start	End	Strand
GWHAAEX00000081	784740	804616	+

Transcript Sequence
>GWHTAAEX017694 ATTTTACTTAACCATTCAGCAAACTCATTTTTCAGACAAATCACAGCAGCAACTATACAAATTATTACCACGAATTGTGAAACTTGCGAGGGATTGGTTTTATCTAGATCGAAACGTGTTGGCGAAAGAAAAGGGGAGGAGAAAAGGAGTGGAAAATTAATGGCGACTGAAGAAGAGAGCGCGGTTAAAGAGCCTCTCGACCTCATCAGGCTTAGCCTTGATGAACGTATATACGTGAAGCTGCGATCCGATAGAGAGCTCCGAGGAAAACTGCACGCTTATGACCAACATTTAAATATGATACTTGGGGATGTTGAAGAAATCATTACTACTGTAGAGATTGATGATGAAACTTATGAAGAGATTGTTCGGACTACAAGGCGTACAGTTCCTTTCCTTTTCGTGAGAGGAGATGGTGTGATTCTGGTTTCACCACCACTGAGGACAGCTTGACTTTGAGAATCTATTATGTAAATCAGAGATCGAGCGACCAACTATATTGTTATGATTTTATATTTAATCTTTTTTATTTGTTTGTCATTTTAATTAGCATGCCTTTATTATTTTGTAGGATCCATAGATGTTTAACTCGCTCTTCTTGCTTATTGCATCTCTTTTTTATTCAATGTCTGCTCGTATGCTTCGCTCAGGGGAGCTTGTTGTCTGATGCAAAGGGAAGGGATGTTTGGGGATTATTTTTTTTCTATTAGTTTATATTGCTGCAACAATACATTTCTTTTTCATGCAAAACGGGTGTTCTTACTCGCATAACACTAAGTTCTACATTATTTACCCATAAAGCTCTAAATTTACTCGC

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Module ID	Function Annotation

Gene family	subfamily
--	--

KO	Enzyme	pathway	mapID
K12622	LSM3	Spliceosome	map03040
K12622	LSM3	RNA degradation	map03018

GO term	Ontology	Name
GO:0000956	Biological Process	nuclear-transcribed mRNA catabolic process
GO:0000398	Biological Process	mRNA splicing, via spliceosome

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	24.780
SRP064423	SRR2545915	Juvenile tuber	36.300
SRP108465	SRR5643513	five period of Gastrodia elata	53.350
	SRR5643514	five period of Gastrodia elata	63.880
	SRR5643515	five period of Gastrodia elata	54.730
	SRR5643524	five period of Gastrodia elata	54.750
	SRR5643525	five period of Gastrodia elata	55.840
	SRR5643528	five period of Gastrodia elata	41.390
	SRR5643658	five period of Gastrodia elata	38.200
	SRR5643659	five period of Gastrodia elata	59.210
	SRR5643660	five period of Gastrodia elata	60.820
	SRR5643661	five period of Gastrodia elata	59.820
	SRR5643662	five period of Gastrodia elata	57.990
	SRR5643663	five period of Gastrodia elata	63.500
	SRR5643664	five period of Gastrodia elata	50.830
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	29.420
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	37.110
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	34.300
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	24.600
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	22.360
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	18.900
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	26.710
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	22.360
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	44.100
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	31.660
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	47.340
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	47.340
SRP279888	Gastro	Gastrodia elata tuber	56.36
	Juven	Juvenile tuber	34.96
	Mother_Gastro	Mother tuber of Gastrodia elata	26.35
	Mother_Juven	Mother tuber of Juvenile	24.14