Gene detail

Detail information of GWHGAAEX017699/evm.TU.scaffold_86.18

Functional Annotation

Database	Orthologs	E value	Annotation
COG	gi\|308051389\|ref\|YP_003914955.1\|	4.00E-128	ATP-dependent DNA helicase RecQ [Ferrimonas balearica DSM 9799]
KOG	KOG0351	0	ATP-dependent DNA helicase
nr	gi\|743817182\|ref\|XP_010930852.1\|	0	PREDICTED: ATP-dependent DNA helicase Q-like 4A [Elaeis guineensis]
Swissprot	tr\|Q8L840\|RQL4A_ARATH	0	ATP-dependent DNA helicase Q-like 4A
trEMBL	tr\|M0T7X6\|M0T7X6_MUSAM	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_Achr6P17780_001}
TAIR	AT1G60930	0	RECQ helicase L4B

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000081	1348088	1426056	+

Transcript Sequence
>GWHTAAEX017699 GTTTGGCTGTATAAGCTGGATTGGTGTTGAGATTGTGTTTGCTTATCCTTGTTTGGAGAGGGGAGAGTCGGCATGACGTTCGTGGTGAATGGTGAAGTGTGGATTTGCGCAATATAGCATTTTTCTTCACTTCTGGGAATTTAGACCCTAACGGAGGATTTGGATTTACGTTAAAGCCACCATTATCCTTATGTTCCGTTTGGAGGATTTGAGGATGCTCATGTAAATGCTGCAGTTAAACAGGCCCATCAGGGTGAATTCTCATAACACCATGGTTTTGAATGGTCTTTTGGCTTCATGGTTGGTAGCTACGGCTACTTTGCGAGAGGTTAGTCATTAGTGGAAAAGTGGTATTAGTTGTGGAAGCTTTCAAAGCATCCAGTTTGCCAGCTTAGACAGCGGTTTTATTGCCACAACCATAAAAGTTACTAGGTCTCCCACTCATTAATGTTCTTGCACGTTTGATGAATAGAGTTGAAAGATCCAGGTTTCAATACACATCCTCGTCTTCATGTGCGATAAAAGTGTGACTGGCAAGAAATGCGCTCCTGAGGGCGATCCTCCAAATGTCAACTGGGCGCAACATGTCACTGCTTTGGAAGATTTCTCATCCCGATATAAATTCTTAAACTCAAACTTTCTTTTCTCTCTCCCTACACAGAAACCTTGTTCTGAATCTGGTGGCAAAGAAATGCGGTCAACAAGGTCAATATCTTGCAACATTCAAAAAACTGGAAGGTTGCAAACCTTGCAAATAGAGAAGGCCTGGAAAGCACTTTTCAGTAGTCAACATAAAAGGGGCTATCCAAGTCCTGGAATTACTGCTCCTTTGAAAACAATTAAAAAGAATGTTACTGTAACTGAGGGCTTAGGTTTATCCAATACTTTGACAGAATCTGAGAGCTTTCAAAGAAGTGGGCTCTCTGGACACAGAAATCTTCCAACGTACCAACGGGGTCAGGACTTGTCTTATAAATCAGAAGCTGGTAATTGTGGCTCCTCGAAGATTGGCGTTGCTAATAGAAAAGCGATGGGAGGGTTTAAAGTATTACAAGAAAATTTAGAAGGAACATCAATGATTTTTGGGTATTCAAGTCCCAAAAAACGTGATCCACGGCACACAGATGACGATAGATATGCTGATAGAAGTCATGCGGATGCTACGGATGATGAAATTCTGGAGAATATTGACGTAGACCAGATTGTAATGAACCACTATCAAGTTATGGGTACACATCAAAGTTCTGTATTGAAATCAATGCCATCCTGTCCCAATAGCATTGAAAAAACTGTTACTTCTTCTCAATGGAGTAGTTTTCCACAGGAACTATGTGAACAATGCAAACATGGCTTTGAACTAGAATTTTGTCCAGAAGCATTAAATCATCTCCAAGACAAGAAAGATAGGCTGATTACAATCTCAAATGAACTTCTTGATCACTCTGATAAGCTTAGTCCCAAGAAATTTGAAAACCTTTGTCAAGAAAGATTGCTTCTGAATAAGCAAATTCATCAGTTAAAAATACACCTTGAAGATGGAATAAGACAAAGTTCACATGCTACGGCCTCAACTTCTCCTGTTCACGGCTTCCATCTTGATACTCCCTTAAGCAGAATTCCTGCTGGTTCCTTCAGATCTGTTTCCGATGTTCACGTGCAAAATAAGATTGTTTCAGGAGATTGGAACTCTCCACCATCATTCTCAACTATAGGCGGTCTAAAATTTTCAAATGCTCCCATTGAAAGGGAAATGCTTCCTCCAAAGATTCTTGAAGTTACGTGCATTGAAGGATCTTCTGATACAAGATGGAAAAGTTTTGAATTTTTATGGACCAAGAAGCTTGAGGCCTACAACAGGAAAATATTTGGAAACCATTCCTTTCGTCCTAATCAAAGGGAGGTTATTAATGCAACTATGAGTGGCAATGATGTTTTTGTCTTAATGCCAACTGGTGGTGGAAAAAGCCTAACCTACCAGCTTCCTTCCCTCCTTTGTCAAGGATTAACATTGGTTGTTTCACCTCTTGTTTCATTGATACAGGATCAAATAATGCACCTTCTGCAGGCAAATATTCCTGCTGCTTACTTCAGTGCCAGTATGGAATGGGCTGAACAGCAAGAAATCCTCAGAGAGCTTCAATCCGATACCAGTAAATACAAATTGCTATATGTCACTCCTGAAAAAATCGCCAAAAGTGATGCTTTGTTGAGGATTTTGGATGCTTTGTATTCTCGGGAATCACTCTCTAGAATTGTCATTGATGAAGCACATTGTGTAAGCGAGTGGGGACATGATTTTAGACCGGATTATCAGGGACTTGGAATTTTGAAACAGAGGTATCCAAATACTCCAGTGCTAGCTCTAACAGCTACCGCAACAGCAAGTGTAAAGGAAGATGTTGTGCGGGCCCTAGGCCTATCGAACTGTATTGTTTTCAAACAAACTTTTAACCGGTCTAACCTATGGTATTCTGTGGTGCCCAAGACCAGTAAATGTTTGAATGATATTGATAAATTTATCAAGGACAATCATTTTGATGAATGTGGGATCATTTACTGCCTATCCAGAATGGACTGTGAGAAAGTGGCTGAAAAATTACAGGAATGTGGACACAAAGCATCTTTCTATCACGGTAGTATGGATTCCCAACAAAGAGCGCTTACTCAAAAACAATGGAGTAAAGATGAATTAAACATAATATGTGCCACTGTAGCCTTCGGCATGGGTATTAACAAACCTGATGTTAGGTTTGTGATTCATCATTCTCTACCTAAATCTATAGAAGGTTATCACCAGGAGTGTGGGCGTGCTGGAAGAGATGGTCTTCGCTCATCTTGTGTTTTGTATTATAATTATGGTGACTACATCCGAGTAAAACACATGCTTAAACAAGGAGTCTTAGAACAAAGCCTTTTTGCTACTGGGTCAAGGAACAATCTTCCTTTTTCAACTGATAGAGTATTAGAAACAAATCTGGAGAATTTGCTACGCATGGTTAATTATTGTGAAAATGATTCAGATTGCCGACGGGTTTTGCAATTAATTCATTTTGGTGAAAAATTCAATCCTCTAGATTGCCAGAAAACTTGTGATAATTGCTGCAAAATGTTGAACTTCGTTGAGAGAGATGTCACTGATATTGCTAGGCAACTGCTGGATCTCATTAAAGAAATGGGATTCCAATTTACTATGTCTCATATTCTGGAAGTATACAAGGGTTCAATGAAAACAAATATAAAGAAGCACAAACACTTCCGTTTGAGCCTTCATGGAGCGGGTAAGCACTTGCCTAAAGGTGAGGCATCCAGAATAATGCGACATTTAGTGATCATGGATATTCTTGCTGAGGAAGTTAAGAAAAGTGATATCTATGGTTCCATATCTTCTGTCTTAAAGGTAAATGACTCTAAAGCTCGCAGCGTCTACTCCGGTGAACAAACAATCACATTGAGATTCCCTTCATGTGCAAAAGCTTACATAAACAAATCTACAATTCCCCTTGCAAAGGCGTCATCATTTATGAAAACAAATTTTGAGCAGCATACTCCTGTTAGAGCACAAATTGAAGCTGACTTGAATTTGTCAGCCAAACTATACGCTGCTCTGCGCAGGCTCAGAACTATACTCGTAAAAGAAGCTGATGAAGGGGTCATGGCTTACCACATTTTTGGAAACGCTACGCTGCAACAACTTAGCAAGAGAATACCAAAGACCAAGGAAGAACTTCTTGAGATCAACGGCATTGGCAAGGCAAAAATGTTGAAGTATGGAGACCGTGTGCTGGAAACAATCGAATCTGTAATCAGAGAACAGCTGAGAGGAAACAAAAACAGCAGTAGCAGCGATAATGACACTTCGAAAAGGAAAAGAGGTCCCATTTGCTTAAAACCTGTGGCAAATGATGATGACTTTGATCAGAGTGCTGTTCAACTCAAAAAGGGAGCAATGAATGTTGGAAGCAGTAGAAAATGTTTGTCTGAAAATCTCAGCATTTCAAGCTATAATGACCGTTTAATTGATTTGGAACTGGATGGCTATGATATGCAGAATGAGCAATAAGATTTTAAGAACAAGCAGAGATCTAGTAGTAGAATTTTGTGCGTATTAGATCAGGGAAGGTAGCACTACTATGTTTATTTCAAGGGTGAAGCAGCGTCTTCTGACTACATAGTTTGGAATCATCCATTCCTGTTGGACAAAATTGTTGATTGATTTGGAGTGGAGAAATTTTTTAATAGATGATTTGATTATTAATTATTATTCTACCTTATATGCTTATGTTGTTATGATTCTTTGTCTCCATTATGCTTGATCAAAGCTCTGAGCTCCAAGCATATTATATTATTCATTATAGTTGTACCATTTGTTATACTTTTACAGCTTGAAATTTATTTTATTCCAAATTCCTAGATCTAATTTTA

Network for GWHGAAEX017699

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
Module8

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00270.28	DEAD	459	627	1.80E-18
PF00271.30	Helicase_C	664	770	2.10E-17
PF16124.4	RecQ_Zn_bind	783	863	2.00E-14
PF09382.9	RQC	871	986	6.80E-24
PF00570.22	HRDC	1027	1094	4.30E-14

Protein Sequence

>GWHPAAEX017699
MCDKSVTGKKCAPEGDPPNVNWAQHVTALEDFSSRYKFLNSNFLFSLPTQKPCSESGGKEMRSTRSISCNIQKTGRLQTLQIEKAWKALFSSQHKRGYPSPGITAPLKTIKKNVTVTEGLGLSNTLTESESFQRSGLSGHRNLPTYQRGQDLSYKSEAGNCGSSKIGVANRKAMGGFKVLQENLEGTSMIFGYSSPKKRDPRHTDDDRYADRSHADATDDEILENIDVDQIVMNHYQVMGTHQSSVLKSMPSCPNSIEKTVTSSQWSSFPQELCEQCKHGFELEFCPEALNHLQDKKDRLITISNELLDHSDKLSPKKFENLCQERLLLNKQIHQLKIHLEDGIRQSSHATASTSPVHGFHLDTPLSRIPAGSFRSVSDVHVQNKIVSGDWNSPPSFSTIGGLKFSNAPIEREMLPPKILEVTCIEGSSDTRWKSFEFLWTKKLEAYNRKIFGNHSFRPNQREVINATMSGNDVFVLMPTGGGKSLTYQLPSLLCQGLTLVVSPLVSLIQDQIMHLLQANIPAAYFSASMEWAEQQEILRELQSDTSKYKLLYVTPEKIAKSDALLRILDALYSRESLSRIVIDEAHCVSEWGHDFRPDYQGLGILKQRYPNTPVLALTATATASVKEDVVRALGLSNCIVFKQTFNRSNLWYSVVPKTSKCLNDIDKFIKDNHFDECGIIYCLSRMDCEKVAEKLQECGHKASFYHGSMDSQQRALTQKQWSKDELNIICATVAFGMGINKPDVRFVIHHSLPKSIEGYHQECGRAGRDGLRSSCVLYYNYGDYIRVKHMLKQGVLEQSLFATGSRNNLPFSTDRVLETNLENLLRMVNYCENDSDCRRVLQLIHFGEKFNPLDCQKTCDNCCKMLNFVERDVTDIARQLLDLIKEMGFQFTMSHILEVYKGSMKTNIKKHKHFRLSLHGAGKHLPKGEASRIMRHLVIMDILAEEVKKSDIYGSISSVLKVNDSKARSVYSGEQTITLRFPSCAKAYINKSTIPLAKASSFMKTNFEQHTPVRAQIEADLNLSAKLYAALRRLRTILVKEADEGVMAYHIFGNATLQQLSKRIPKTKEELLEINGIGKAKMLKYGDRVLETIESVIREQLRGNKNSSSSDNDTSKRKRGPICLKPVANDDDFDQSAVQLKKGAMNVGSSRKCLSENLSISSYNDRLIDLELDGYDMQNEQ

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K10901	BLM, RECQL3, SGS1	Homologous recombination	map03440
K10901	BLM, RECQL3, SGS1	Fanconi anemia pathway	map03460

Gene Ontology

GO term	Ontology	Name
GO:0044237	Biological Process	cellular metabolic process
GO:0006281	Biological Process	DNA repair
GO:0006260	Biological Process	DNA replication
GO:0006310	Biological Process	DNA recombination
GO:0005524	Molecular Function	ATP binding
GO:0043138	Molecular Function	3'-5' DNA helicase activity
GO:0004386	Molecular Function	helicase activity
GO:0003824	Molecular Function	catalytic activity
GO:0000166	Molecular Function	nucleotide binding
GO:0003676	Molecular Function	nucleic acid binding

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	14.670
SRP064423	SRR2545915	Juvenile tuber	13.670
SRP108465	SRR5643513	five period of Gastrodia elata	4.480
	SRR5643514	five period of Gastrodia elata	4.610
	SRR5643515	five period of Gastrodia elata	4.060
	SRR5643524	five period of Gastrodia elata	3.860
	SRR5643525	five period of Gastrodia elata	2.380
	SRR5643528	five period of Gastrodia elata	1.490
	SRR5643658	five period of Gastrodia elata	1.910
	SRR5643659	five period of Gastrodia elata	5.580
	SRR5643660	five period of Gastrodia elata	6.820
	SRR5643661	five period of Gastrodia elata	6.830
	SRR5643662	five period of Gastrodia elata	6.110
	SRR5643663	five period of Gastrodia elata	6.610
	SRR5643664	five period of Gastrodia elata	5.400
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	6.200
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	4.410
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	5.700
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	6.150
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	6.460
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	6.600
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	5.680
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	6.800
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	10.770
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	8.210
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	5.860
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	5.860
SRP279888	Gastro	Gastrodia elata tuber	5.16
	Juven	Juvenile tuber	6.76
	Mother_Gastro	Mother tuber of Gastrodia elata	2.25
	Mother_Juven	Mother tuber of Juvenile	3.41