Detail information of GWHGAAEX017703/evm.TU.scaffold_86.25


Functional Annotation

DatabaseOrthologsE valueAnnotation
COGgi|512552111|ref|YP_008090017.1|2.00E-593-methyladenine DNA glycosylase/8-oxoguanine DNA glycosylase [Chthonomonas calidirosea T49]
KOGKOG28751.00E-1298-oxoguanine DNA glycosylase
nrgi|672116827|ref|XP_008781583.1|8.60E-160PREDICTED: N-glycosylase/DNA lyase OGG1 [Phoenix dactylifera]
Swissprottr|Q9FNY7|OGG1_ARATH4.00E-130DNA-(apurinic or apyrimidinic site) lyase
trEMBLtr|A0A067KM07|A0A067KM07_JATCU1.00E-140Uncharacterized protein {ECO:0000313|EMBL:KDP32834.1}
TAIRAT1G217101.00E-1298-oxoguanine-DNA glycosylase 1

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000008116439371661582-
Transcript Sequence

Network for GWHGAAEX017703

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation
Module2

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF07934.11OGG_N871999.60E-21
PF00730.24HhH-GPD2033384.70E-11
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K03660OGG1 Base excision repair map03410

Gene Ontology

GO term OntologyName
GO:0006289Biological Processnucleotide-excision repair
GO:0006281Biological ProcessDNA repair
GO:0006284Biological Processbase-excision repair
GO:0003824Molecular Functioncatalytic activity
GO:0003684Molecular Functiondamaged DNA binding
GO:0008534Molecular Functionoxidized purine nucleobase lesion DNA N-glycosylase activity

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms14.350
SRR2545915Juvenile tuber11.590
SRP108465SRR5643513five period of Gastrodia elata6.490
SRR5643514five period of Gastrodia elata8.350
SRR5643515five period of Gastrodia elata5.480
SRR5643524five period of Gastrodia elata8.050
SRR5643525five period of Gastrodia elata6.410
SRR5643528five period of Gastrodia elata3.590
SRR5643658five period of Gastrodia elata3.770
SRR5643659five period of Gastrodia elata7.440
SRR5643660five period of Gastrodia elata8.320
SRR5643661five period of Gastrodia elata8.680
SRR5643662five period of Gastrodia elata7.020
SRR5643663five period of Gastrodia elata6.160
SRR5643664five period of Gastrodia elata6.390
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_112.950
SRR6049655Rhizomagastrodiae_C368-T10_good_113.490
SRR6049656Rhizomagastrodiae_C368-T07_good_116.650
SRR6049657Rhizomagastrodiae_C368-T07_good_115.120
SRR6049658Rhizomagastrodiae_C368-T04_good_113.370
SRR6049659Rhizomagastrodiae_C368-T04_good_114.520
SRR6049660Rhizomagastrodiae_C368-T01_good_115.920
SRR6049661Rhizomagastrodiae_C368-T04_good_116.770
SRR6049662Rhizomagastrodiae_C368-T01_good_117.720
SRR6049663Rhizomagastrodiae_C368-T01_good_121.660
SRR6049664Rhizomagastrodiae_C368-T10_good_116.270
SRR6049665Rhizomagastrodiae_C368-T10_good_116.270
SRP279888GastroGastrodia elata tuber 5.75
JuvenJuvenile tuber8.69
Mother_GastroMother tuber of Gastrodia elata 2.57
Mother_JuvenMother tuber of Juvenile 4.55