Gene detail

Detail information of GWHGAAEX017704/evm.TU.scaffold_86.26

Functional Annotation

Database	Orthologs	E value	Annotation
COG	gi\|256822837\|ref\|YP_003146800.1\|	3.00E-70	saccharopine dehydrogenase [Kangiella koreensis DSM 16069]
KOG	KOG0172	0	Lysine-ketoglutarate reductase/saccharopine dehydrogenase
nr	gi\|672166870\|ref\|XP_008803374.1\|	0	PREDICTED: alpha-aminoadipic semialdehyde synthase isoform X2 [Phoenix dactylifera]
Swissprot	tr\|Q9SMZ4\|AASS_ARATH	0	Saccharopine dehydrogenase
trEMBL	tr\|M0RKP2\|M0RKP2_MUSAM	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_Achr10P23170_001}
TAIR	AT4G33150	0	lysine-ketoglutarate reductase/saccharopine dehydrogenase bifunctional enzyme

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000081	1708566	1819033	-

Transcript Sequence
>GWHTAAEX017704 TCCTATTATATTTTATCAAAAGAGAGATCTCTATTCTAATTTGTAGATAAATGTATTTATTTATTTATGTACTGAAACTTGACGTGGCAGCCGATAATCTTAAAAGCTAAATTCCTTTAAAAATCGTAGGCCCTTGAATCTCTGACAGTACCTAACAAAAGTATGAGATTTAAGTTCGCTTTTTTTAGCACATAAAAAAATAATATTTAGACTATAAGCCTTTCGCCTTCATGATTGCTTTGCCCGTCCGCTCTTCCCAGCCAGCTGCCTTAACCAGTGCTCGACCTCTTTCCCCACCAACCTCCTAAGCATAGCCTAATCCCTGCTCCCAAGGCCGCTATTTAGGCGGCATCCCTCCTCCAGCCCGAGCTTTTAGCGTAGGCCAAGCTCTTCTGGTTTCCAAACTTGTCAGTCACTACTGCTCCATCTCAAAGTTCTCATCCACTTCACCGCCGTCATCCACCTCCCTCCTCCCCTCTCTCTCCCTCCCCCCCCTCGTTGATTCTATATCAGCAACTGTGGTCGAGCTCTCCAGCTGCTTTCCATAACTTACAGCGTCTGTAAAATGCCCTCTCCCTCCCTCCTCACACACACACATATATCTTAACCGCCCTATCCTTTTACAAGGAAAATATTTTTTCTTGCTAGTTGTCATCATCCATAAAAAAATTTATTGGGAAAACTTTAACGAAATAAAAAGAAGAATTTAATGTGATTTTTGTTTTTTCTGGTCTTAAATGTGATTTATTTAAGTGTTTTGTTCATCGACATTTTAAAGCATTGTAGTGCTATCGGCAGATTGCCATTGTTGTTTTTGCAGCGATGTCATCTTCAACTTTCGAATAACTAAAGGGATTTACGGGAAATTGGAGAGCCCAGGACTGTCGCGCCGCCCATAGCGAGGTCGCGAGCCAGTGGTGAAGTTGCCAAAGTCCGTTCGTGAGGTGCAGTAAAAAAAGCCGGCAGTGGCACTTGAATTGCTCTTGCCGTCATGTTTGGTAATGGTGTTGTTGGTGTTCTTTCTGAGACTTCAAACATATGGGAGAGGAGAGCTCCGCTAACCCCTGCACACTGTGCCCGCCTTCTGCACAATGGAAAGGATAAAAATGGTGTTAAAAAGATTATTGTGCAGCCAAGTACAAGACGTATCTATCACGATGTCCAATATGAAGATGTTGGGTGTGAAATATCAGATGACTTATCTGAGTGTGGTCTTATTATAGGTGTCAAACAGCCAAAGTTGGAGATGATTCTTCCAGATAGGGCTTATGCATTTTTCTCTCACACCCATAAGGCTCAAAAGGAAAACATGCCTTTGTTAGATAAGATTTTTTCTCAAAGTGCTACGTTATATGACTATGAGCTGATAGTTGGGGACCATGGTAAACGGATCCTTGCCTTTGGAAAGTTTGCTGGTAGAGCCGGATTAATTGATCTTCTACATGGCCTTGGAAAACGATATCTAAATCTTGGATATTCAACGCCTTTTCTATCTTTGGGAACATCTCATATGTATCCCTCCCTTGCTGCTGCAAAGGCTGCTGTGATTGCTGTAGGTGAAGAAATAGCTACGCATGGTTTATCACCTGGAGTTTCTCCTATAGTCTTTGTCTTTGTTGGAACTGGAAATGTATCTCAAGGTGCACAGGAGATATTTAAACTCCTACCACATACCTTTGTAGATGCAAGCCAGCTACCTGAAATTATTAGACAGTTTGGGGAAGGAGCTCATCATTCTTCATCAAGAAAAAGAGTTTTTAAAGTATACGGCTGTGTAGTAACTTGTAAGGAGTTTGTTGAACCCAAGGATCCAACTAAAACCTTTACTAAGGTTGATTATTATGCGCATCCGGATCATTACAATCCTGTATTTCATGAAAGGATTGCTCCTTATGCATCAGTCATAATCAATTGCATTTATTGGGAAAGTAGATATCTTCGTTTGCTAACTACAAAGCAAATGAAAGAGCTAGCAAAGGATGGGTGTCCTCTCATTGGCATTTCAGATATAACTTGCGACATTGGGGGTTCCATAGAGTTTGTCAACCATTTGACAACAATTGAGAAGCCTTTTTTCAGGTATAATCCTTTCTCTGATTCATATCATGATGACATGGATGGTGGTGGTTTAATATGCCTAGCTGTTGACATTCTCCCGACTGAGTTTTCAAGAGAGTCTTCCCAGCATTTTGGGGATATACTATCACAATTCGTACGTAGCTTGGCTTGGGCAAAGAACATGACAGAACTTCCTGCTCACTTGCAGAGAGCTTGCATAGTTCATAGTGGAGCACTTACCTCTTTGTATGAATATATCCCTCGAATGAGAAACTCTTCTACAATCGATTTGGTCATGGAAACTGTTGATGGTTCTTCTAAGAAGAAGAAGTACAACACACTGGTATCCTTAAGTGGCCATTTATTTGATCAGTTACTAATTAATGAAGCCTTGGATATTGTTGAAGCTGCTGGTGGATCTTTTTGCCTGGTTAAATGTGAAGTTGGACAAAGTACAAATCTCATGTCCTATTCAGAACTTGAAATCAGTGCTGATGACATAAATATCCTAGATCAAATATGCTCTGCTCTAGCACAGCTTGCAAATCCGAGTCGTGAAGATGGAGTTTTAAATAAAGAAAAAGAATTTTCTTTAAAAGTCAGCAAAGTTTGTGAAAGCATATTGAGTGAGAGAATTGATTTTCTTAAGAGACCAACAGTTCTGATATTGGGTGCTGGTCATGTTTGCCAACCGGCCGTTAAATTTTTAGCTTCAGTTGGGGATTTAAATTTCAATTTTTTCAAAAGATATGATAGCATTGATTCTCAAGAAGTTGAGCAGTTTGAAGTTGTTGTGGCATCTCTATACCAAAAGGATGCAGAAGAGACAATTGCAGGCATAACGAATGCAAGAGCTGTTCAGCTTGATGTAACCAATGAAGAAACCCTTTCTTTGTTTGTATCCCAGGTTGATGTCGTGCTTAGCCTATTGCCTTCCAGTTTCCATGCCATCATAGCAAAGGCCTGCATAGAGCACAAGAAGCATCTTGTCACTGCAAGTTATGTTGACAGTTCAATATCAGCATATCATGAGAAGGCCAAAAATGCTGGTGTTACGATTCTTTGTGAAATGGGACTAGACCCTGGCATAGATCACATGATGGCAATGCGAATGATTAACCATGCACATATTAAAAAGGGAAAAATTCGGTCATTCACTTCCTACTGTGGTGGATTGCCAGCTCCAGATGCTGCAAACAACCCACTTGCTTACAAGTTCAGTTGGAGCCCAGCTGGCGCAATCAGAGCAGGGAGAAATCCAGCTACCTATAAATATTTAGGGATGGTCGTAAATGTTGATGGTAGTGAGCTATATGACTCAGCAGTTAGTTTCCGCATCCCAGATCTGCCGGCTTTTGCTTTGGAATATCTCCCAAATCGTAATTCCTTGCTGTATGGGGATTTGTATGGGATCAGTGCTGAAGCATCAACAGTCTTTAGAGCTACTCTTCGTTATGAAGGATTTAGTGAAATAATGAGTTGTCTTGGAAAACTTGGCTTTTTTGATACAAGTGTCCATCCGAAGCTGAAAGGAGTACAGAGACCAACTTTTGGAGCGTTTTTAAATGAATTTCTAAAGAACAAAAGTGCAGAACTTTTGGATTCTGAAGAATTGCTGGTTTCTATTGATGAAGAAGAAATTGTTAAGAGGGTGATCGAACATGGTTTCTGCAGAGAAGCTTCCACTGCTACAAAAGCAGCCAAAATTTTAAAGTTTTTGGGACTTCACGAGGATGCGAAAATCCCTGAATCGTGTTCCTCTGCATTTGACGTTGTTTGTCTACGGATGCAAGAGCGATTATGCTATTCGAGTGGGGAGCAGGACATGGTGCTTTTACACCATGAAATCCAAGTAGAGTATCCCGATGGCAAGCCAACTGAGAGCCATACAGCCACTCTTCTAGAATTTGGAAAGATAGAAAATGGAAAAACTACCACAGCTATGGCTTTAACTGTGGGAGTTCCAGCTGCTATTGGTGCTCTGCTATTGCTTCAGAACAAGATTCAAACAAGGGGTGTTATCAGGCCAACTGAACCTGAAATATACATGCCTGCATTGCAATTGCTAGAAGTTTGCAACATTAAGCTTACAGAGAAAATTGAAACGCTGAGGTAGACGGATATTGGAAGCTCATAAACGTGTGAAAGAAGCTCTCCAACTACTACTGAAGCTTTTCAAGGAAAAGCTGAACGATCATTAAACGGATAAAATAGACATATGATCTAGAGTTGTGATTAAAGCTTTTATTCCTAATTGGAGATTAAAGCCGATACAATGTTTCTATTAAAATGTATATGCATCCAGATTTAGTTTTAGCTTTGATTTAACTTGTTTGAAAAGGCTTTATTTCAGATAAAGTAGGTCTGCATTAACTGAAGCAAGTTATTTGTGTTAGCATAATCACTTCCCAGTGTCAATTGATGTGTCCTCCAACATTTATGTTCTCATCTACCAAAAAGTAACTGTAAGCACTTACATAAAACTAAATGATAATTCTGATTTTTACTAATTTCTTAGCCA

Network for GWHGAAEX017704

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
Module4

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF05222.14	AlaDh_PNT_N	8	144	5.40E-23
PF04455.11	Saccharop_dh_N	470	541	1.60E-18
PF03435.17	Sacchrp_dh_NADP	576	710	2.20E-16
PF16653.4	Sacchrp_dh_C	714	1046	3.10E-82

Protein Sequence

>GWHPAAEX017704
MFGNGVVGVLSETSNIWERRAPLTPAHCARLLHNGKDKNGVKKIIVQPSTRRIYHDVQYEDVGCEISDDLSECGLIIGVKQPKLEMILPDRAYAFFSHTHKAQKENMPLLDKIFSQSATLYDYELIVGDHGKRILAFGKFAGRAGLIDLLHGLGKRYLNLGYSTPFLSLGTSHMYPSLAAAKAAVIAVGEEIATHGLSPGVSPIVFVFVGTGNVSQGAQEIFKLLPHTFVDASQLPEIIRQFGEGAHHSSSRKRVFKVYGCVVTCKEFVEPKDPTKTFTKVDYYAHPDHYNPVFHERIAPYASVIINCIYWESRYLRLLTTKQMKELAKDGCPLIGISDITCDIGGSIEFVNHLTTIEKPFFRYNPFSDSYHDDMDGGGLICLAVDILPTEFSRESSQHFGDILSQFVRSLAWAKNMTELPAHLQRACIVHSGALTSLYEYIPRMRNSSTIDLVMETVDGSSKKKKYNTLVSLSGHLFDQLLINEALDIVEAAGGSFCLVKCEVGQSTNLMSYSELEISADDINILDQICSALAQLANPSREDGVLNKEKEFSLKVSKVCESILSERIDFLKRPTVLILGAGHVCQPAVKFLASVGDLNFNFFKRYDSIDSQEVEQFEVVVASLYQKDAEETIAGITNARAVQLDVTNEETLSLFVSQVDVVLSLLPSSFHAIIAKACIEHKKHLVTASYVDSSISAYHEKAKNAGVTILCEMGLDPGIDHMMAMRMINHAHIKKGKIRSFTSYCGGLPAPDAANNPLAYKFSWSPAGAIRAGRNPATYKYLGMVVNVDGSELYDSAVSFRIPDLPAFALEYLPNRNSLLYGDLYGISAEASTVFRATLRYEGFSEIMSCLGKLGFFDTSVHPKLKGVQRPTFGAFLNEFLKNKSAELLDSEELLVSIDEEEIVKRVIEHGFCREASTATKAAKILKFLGLHEDAKIPESCSSAFDVVCLRMQERLCYSSGEQDMVLLHHEIQVEYPDGKPTESHTATLLEFGKIENGKTTTAMALTVGVPAAIGALLLLQNKIQTRGVIRPTEPEIYMPALQLLEVCNIKLTEKIETLR

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K14157	AASS	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Biosynthesis of antibiotics	map01130
		Lysine degradation	map00310

Gene Ontology

GO term	Ontology	Name
GO:0055114	Biological Process	oxidation-reduction process
GO:0016491	Molecular Function	oxidoreductase activity

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	55.570
SRP064423	SRR2545915	Juvenile tuber	36.860
SRP108465	SRR5643513	five period of Gastrodia elata	28.890
	SRR5643514	five period of Gastrodia elata	25.130
	SRR5643515	five period of Gastrodia elata	26.670
	SRR5643524	five period of Gastrodia elata	27.240
	SRR5643525	five period of Gastrodia elata	30.740
	SRR5643528	five period of Gastrodia elata	56.880
	SRR5643658	five period of Gastrodia elata	60.280
	SRR5643659	five period of Gastrodia elata	20.360
	SRR5643660	five period of Gastrodia elata	22.130
	SRR5643661	five period of Gastrodia elata	15.790
	SRR5643662	five period of Gastrodia elata	28.020
	SRR5643663	five period of Gastrodia elata	32.040
	SRR5643664	five period of Gastrodia elata	27.180
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	43.170
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	25.690
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	35.180
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	64.170
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	74.630
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	105.100
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	61.030
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	80.750
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	31.530
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	40.850
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	28.380
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	28.380
SRP279888	Gastro	Gastrodia elata tuber	25.29
	Juven	Juvenile tuber	15.10
	Mother_Gastro	Mother tuber of Gastrodia elata	73.59
	Mother_Juven	Mother tuber of Juvenile	29.49