Detail information of GWHGAAEX017706/evm.TU.scaffold_86.29
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|148378239|ref|YP_001252780.1| | 2.00E-32 | FAD-binding protein [Clostridium botulinum A str. ATCC 3502] |
| nr | gi|661883756|emb|CDP12589.1| | 3.68E-147 | unnamed protein product [Coffea canephora] |
| Swissprot | tr|Q8GTB6|THCAS_CANSA | 3.00E-112 | Tetrahydrocannabinolic acid synthase (Precursor) |
| trEMBL | tr|A0A068UWE2|A0A068UWE2_COFCA | 1.00E-147 | Coffea canephora |
| TAIR | AT5G44400 | 2.00E-129 | FAD-binding Berberine family protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000081 | 2036854 | 2038840 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX017706
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module4 |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF01565.22 | FAD_binding_4 | 1 | 89 | 1.30E-15 |
| PF08031.11 | BBE | 345 | 402 | 7.90E-21 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K22395 | K22395 | Metabolic pathways | map01100 |
| Biosynthesis of secondary metabolites | map01110 | ||
| Phenylpropanoid biosynthesis | map00940 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0055114 | Biological Process | oxidation-reduction process |
| GO:0016491 | Molecular Function | oxidoreductase activity |
| GO:0071949 | Molecular Function | FAD binding |
| GO:0050660 | Molecular Function | flavin adenine dinucleotide binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 8.200 |
| SRR2545915 | Juvenile tuber | 2.240 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 11.620 |
| SRR5643514 | five period of Gastrodia elata | 14.000 | |
| SRR5643515 | five period of Gastrodia elata | 14.200 | |
| SRR5643524 | five period of Gastrodia elata | 10.290 | |
| SRR5643525 | five period of Gastrodia elata | 11.050 | |
| SRR5643528 | five period of Gastrodia elata | 9.970 | |
| SRR5643658 | five period of Gastrodia elata | 11.190 | |
| SRR5643659 | five period of Gastrodia elata | 0.940 | |
| SRR5643660 | five period of Gastrodia elata | 2.240 | |
| SRR5643661 | five period of Gastrodia elata | 1.370 | |
| SRR5643662 | five period of Gastrodia elata | 2.200 | |
| SRR5643663 | five period of Gastrodia elata | 2.680 | |
| SRR5643664 | five period of Gastrodia elata | 2.270 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 20.910 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 37.570 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 9.210 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 8.990 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 7.280 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 4.950 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 4.880 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 3.390 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 7.280 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 8.530 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 38.240 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 38.240 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 1.99 |
| Juven | Juvenile tuber | 0.35 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 42.27 | |
| Mother_Juven | Mother tuber of Juvenile | 2.93 |