Gene detail

Detail information of GWHGAAEX017708/evm.TU.scaffold_86.32

Functional Annotation

Database	Orthologs	E value	Annotation
COG	gi\|428310074\|ref\|YP_007121051.1\|	3.00E-23	WD40 repeat-containing protein [Microcoleus sp. PCC 7113]
KOG	KOG0283	7.00E-104	WD40 repeat-containing protein
nr	gi\|672193801\|ref\|XP_008776130.1\|	0	PREDICTED: uncharacterized protein LOC103696321 isoform X2 [Phoenix dactylifera]
Swissprot	tr\|Q3Y8L7\|DAW1_CHLRE	6.00E-13	Dynein assembly factor with WDR repeat domains 1
trEMBL	tr\|M0RIK9\|M0RIK9_MUSAM	1.00E-161	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_Achr10P15840_001}
TAIR	AT5G42010	7.00E-104	Transducin/WD40 repeat-like superfamily protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000081	2086456	2092284	-

Transcript Sequence
>GWHTAAEX017708 ATGCCTCACTTTGGTGTGGGTCGGGAAGCGTTCCTTGATTCAGGTGATAACTTCAGAACTTCAGTTGACTCTTCATCATCTTATTTCTCAGTAGATGAAGACCATGAATTCAAGCTACGGTTCATCAACCCTGAATCATGGATCGGAGATTTGATGTCAGTCCAGGAAAGGAGGCAAAAGTTCTTGAGCACAATGGGTTTTGAAGATTTTGTTTCTTCTAATACAAAATATTCTCTGCCTTTTAAGGAGCTTCCAACTGAAAACTTGCCAACGCACATTGACATTAGAAGACTTACAGAAGGGAAAGGTGCTTGTTTGGATTCTTTTCAAGCACTGGATGATGGGAAAAATTGCATAAATGATCCGGACAATGGAAAGGCTATCAGCTTTCATGGGCATGGGAATAATGGTTTACATACTATGCTCAAAGATGTAGGCTTAGACTCACATTTGACATTCCAGGAGTTTGAAAAGTTGGTTGGATTACCTTGCTCTGTTCACGAGTTAATGAACAGTGATGCTTCATCTTCAGGAGAAAACCAATGCGCCGATAGGAAAAGGCATAGGAGCTGGTGGAGAAGGATTCTCAACAAGCAACATATTGTAGGAATGTGCAGGCTTGATGTATCTGTTAAAAATTCCCAACTATCATGGACCATCAGAACCAAAGTACTCAGACGTAGGAGACGGCAGGGTAAACTAAATGGTTTATTCATTGAGCAGGAAATCCAAGCACATAAAGGTTCAATTAGAATTATGAAATTTAGTTTATCGGGTAGTTATCTAGCTAGTGGTGGTGAAGATTGTATTGTTCGCGTTTGGCAGATTGAGGAAGCTGAAACTTCCTGCAAGTGTACAACGGAAGGTGGCTCAGCTTATACTTATGATAAATCAAAAAGCTGCTCTTTAACTAGAATGAAGAGTGCTAACTGTGCTTCAATTGTGTTCTCAAAGAAGACTCTTAAAATCTCAGAGAAACCAAGGCATGAATTTTGTGGTCATACTGGTGAAATCCTTGATCTTTCTTGGGCTTCATCAGATCTTCTTCTTTCATCCTCCATCGACAAAACTGTGCGTTTGTGGAAAGCTGGTTATGACAAGTGCCTTCAAGTTTTTCTTCACAATGATTATGTGACGTGCATTCAGTTCAATCCCATTGATGAGAGGTTCTTCATCAGTGGTTCCATCGATGGGAAAGTCCGCATTTGGGGTATTTCGGAGAATCATGTGGTTGATTGGGTTGACATACGGAATATTGTAACCGCTGTGTGCTATCGCCCAGATGGAAAGGCTTTTGTTGTTGGTTCTATCAATGGCAATTGCCGGTTATATGATTACACAGGCTATCATATGCACTTATGCATGCAATTTTCCACTGAAGGCCGACAAAAATTCACGGGGAGACAAATTGCTGGTTTACAGTTCTCACCAAATGATACGCGGCAGATTATGATCACGTCAGCAGACTCCACAGTTAGAGTTTTTGATGAATTTGGTGGTGCTCACAAATTCCGAGGCCTTGGAAAAACAAGGTGCCATGCATCCGCCTCATTTACAACAAATGGCCGGCACATCATCTCCATCGGCGCAGGCTCCAGCGTGCATATCTGGAACTATGACACCTCGATGAAGCCATCGACTCGAAGAGCGAAATCAGTTCGTTACTCTGAAGCCTTCTTTTCTTCAGGAGTTTCGGTTGCTGTTCCATGGCCAGAGATGGATGACATGGCAGCCGATCTAAGCACCAGCAGCCTTCATCTTCAATCCCCAATGAAAATTCTGGGGCCTTCGACCTGGTTCCCGAATTCCGATTGCTTTTTTCTTGGGTCCGGTCTGTTTGCTGACGGAGCTTCTCGGGTTGGACCAGCTGAGAAGCTTCCATTATCAGGTCACGCCTTGCCTGAGGTTGAGAGGGACCTGATTTTTCATCTATCGGCTATGCGGAAAATGAGAATTGTGACTGCCAGTTATGACGGATTCATCAGATCCTTCCGTAATTATGGATCGGCCCTCTGGTTGTAA

Network for GWHGAAEX017708

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
Module2

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00400.31	WD40	243	274	0.00075
PF00400.31	WD40	326	362	0.00049
PF00400.31	WD40	367	403	0.001

Protein Sequence

Gene family

Gene family	subfamily
Ubiquitin Family	DWD

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0005515	Molecular Function	protein binding

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	2.420
SRP064423	SRR2545915	Juvenile tuber	1.620
SRP108465	SRR5643513	five period of Gastrodia elata	4.160
	SRR5643514	five period of Gastrodia elata	3.690
	SRR5643515	five period of Gastrodia elata	2.680
	SRR5643524	five period of Gastrodia elata	3.100
	SRR5643525	five period of Gastrodia elata	1.940
	SRR5643528	five period of Gastrodia elata	1.530
	SRR5643658	five period of Gastrodia elata	1.740
	SRR5643659	five period of Gastrodia elata	1.620
	SRR5643660	five period of Gastrodia elata	0.970
	SRR5643661	five period of Gastrodia elata	1.660
	SRR5643662	five period of Gastrodia elata	1.140
	SRR5643663	five period of Gastrodia elata	1.010
	SRR5643664	five period of Gastrodia elata	0.840
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	3.110
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	5.440
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	5.100
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	3.120
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	4.230
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	4.380
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	3.710
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	7.180
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	4.730
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	3.190
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	7.410
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	7.410
SRP279888	Gastro	Gastrodia elata tuber	1.23
	Juven	Juvenile tuber	1.64
	Mother_Gastro	Mother tuber of Gastrodia elata	2.22
	Mother_Juven	Mother tuber of Juvenile	1.04