Gene detail

Detail information of GWHGAAEX017721/evm.TU.scaffold_86.46

Functional Annotation

Database	Orthologs	E value	Annotation
nr	gi\|743817689\|ref\|XP_010931009.1\|	7.72E-24	PREDICTED: uncharacterized protein LOC105052023 [Elaeis guineensis]
trEMBL	tr\|M0TA24\|M0TA24_MUSAM	1.00E-19	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_Achr6P25280_001}

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000081	2439836	2443205	-

Transcript Sequence
>GWHTAAEX017721 AAAAAATGGCAGGCCTTGTGGTACGTTGATAGACCCGGCCGGAGGATTTGATCTTCGTTGACAGCCCTTCTCTCTCGATCGCAAGACGCACGCCTCGCATACAGAAGCGATCTCCGCCCACGTTTTCATGGTGAGAGAAATTCTCAGCGTTTAGAAGTCCTCGAGCCTAATCATAGGCCTTATCTTTGATCGCTGTCTTTTTTCTCATGGGGCATGCGGTGGGGAAAGGGGGTGGTTTTATAAGCGAAGACATCCTTTCTGCCATTTCTTCGTGCTCCGTCATTCGTTCTCCTGACTTGTACTTCTGCCACCGATGCCAAGTCGATGTCCCGATAGATGGTAGTGCCGATTGGCTTAAAACCCTAGATAGCCAGTGGCGTGTTGTTCTCCTATGCGGTGGATGCTTTGCTGTTGTTAGATCTGCTCGTGTATGTTCCTACTGCTTCTCTTGGTTTCCATTTTTGGAAAAGGGGATTCTTGATTGCAATATATGTTCCCGCCGTGTGCACCGCTCCTGCGTCCCGCAGCACCACCGAAATTATTCGGATTCACTGCTTGACGCTGTCAAGTTTATCTGCATTGATTGTTGCCCCATTCCTCAACTACCACGAGGATATCCTGAAATTTCTGGAGGTTCCGCATCTCAAAATAGGGTTCCTTTGGAAGATTTGGCCGGAGAAGCACCGTCGATTTCAGAGAAGCTGACTTCAAACGGTGAGGCTAGAGAGAATTTGACGAATGAAGTAATTGTTACAGAGGATTCTTCTAAGCTTAAGAGGAAAGAGTTTGGTGTTGTTCCTTTGGTAAGGAAGCCTTCTTACATCAATTTTACTGATCCTGGTGAGAACGTAGCTCTTCCAACAATAAATGATGATTTACAAAGTATTTCTTGGAGTTTGTGCCCTAATGGAGCGAGTCAGCTTTCCGTCCCAAGGGAAGAGCAGTGCAGTTATAATTCAGTTGCTAGGACACGGTACTCTAATTCCTGTGCCCAACATGACAAGATTGATGCTTGTATTGAGAATAAATCCTTACCTGGGGATAAAGAAAATTCTGAATCAATTTTGACTAGTAGTTCATTAATTAGTAGGGAGAATGGGAATGATATGAAAAAAATTAAGGGATATAATGCAGGTTGTTCTGAGGATTTTTCACTAAATGTGCTGGGAAGCTCTATAAAGCTTACAGATTATGCTGATGATAGCAGCATTGCATTGCAACCATGTAGTTTGAATACTGGTTTGAATAGTACAAGTCCACTTGCAAACTATAAATTTGGGGAATGTGCTGGAGGACCCTCTGAACTGAAGCGAAAGAGCATTGATGAGATGGGCCCAGGTTATTCCATGAAGAAATATTTCAGGAAAAAGCAGGGTTCTGAAAGGATTATGCGAGAAAATTCTCATTCACTATTAAGTAATAGTACATTATTAAAATGGGATAGTGGAGATATATTGAAGCAAAATATGGTCTGCAGCACAGATTGCACGAATGATTTCTCATTGCATAAGAAGGATAGCTCTATAAAGTTTTCTGATTTTGTTGATGATGGCAGTAATGATAGCTCCAAATCATTACCGCATTATAGATTGAATACCTTTTTTAATAGTACGATGCTAGAAACAAAGTATATGTTTGTTGATAGTGATCGACTGGAGTTCCCTAAACTTCAGCGAAAAAGTATTGATGAGATGGGTTCTGGTAGGCCCTTAAAAAAGTATATAAGGAAGTGTTGGGCTTTTGGGAGAATTATGGAAGAGGATTCTCATTCAATTTTGACTAGTGGTTCATTATTAAAACTAAACGATAGGCTTCTGATGAAAGAAACTACTGCGTGCACCAAAAACTACCCAACGGATTTCAACTTAAAGGAGAATGGGAGCTCTCTAAAGTTTCAAAACTCTACTACTAATCTTAAGAAAGCTGGCCCAACGTTGTTACCTTACCATAGTTTGAATTTGTTGTCAAATAGTTCAACAACATTTACCAATTACAAATTTTGTGTTGGTGATGGAGAAAGATCTTCAAAATTGCAGCGAATGAGCTTTGATGAAACAGCCTATAGGTCCATGAAGAAATATTTTAGGAAACATTGTAGTTCGAAAAGAATTATGAAAGGGAGCTCTGAATCACATTTATGTAATACTTCAATAGTTAACATGGAGACTGAGGAGCTTGCAAAGCAAATTAGGCTATGTACAACATGCTACACAGGAGTTTTCTCCTTTAAGGAGCAGATGAGCTCCTTAAACTTTTCATGTTATAATAATGATGGCTCTGTTTTGTTACCATGTGATAGTTTGAGTAGTTCACCAGATAGACATTATAGATTTGGTGATGATGAGAGATTTTCTAAAGTAAAACGAAAATGCATTGATGTCATAGATTCAATTAATATGAAGAAATATTATAGGAAACGTTGGCGTTCTAAGAGAGTCTTACGGGGGAATTCACAGTCCTTTTTTGTTAATAGCTCACTACTTAAGCGAGATGAAGATCTGATGCAACAAACTAGTGGGTGCAGCACATTTTGCTCAGGGAATGTTGCCTTGAAGGAAAAAAATTCTCCAATAGAGTTCCCAAATTCTACCGATGATGGCAGTATTGTTGGGTCTGCATTGTTACAATTTCAAAGTTTGAGTTTTTATTTGAAAAGTACAATGCCTCTAATGAAGTATAGTCTCTATGATGAAGAAGATGGAGAGAGCTGCTCTAAATTGCAGCGGAGGAGCATTGATGCAATAATTTCAGATGGGTCTTTGAAAAAATATTTCAGAAAACATTTGGGTTCTGGGTGATTAATGCAATGGCAGAACACGTGAATTCTACTTTGATATCTAAGTTGCTCTGGGCTATCTAATGTATTCTGTGTTATTGTTGATTTCAAGGATACATTCCTCTGCAAACATTTTGTAAATTTGTCAAGGACACTGGTAATATGATGTTAAGATTCTACTATTGGCTTAGTTATTCTTGATCCAGAATTTCAGCAGAAAGAATTCGTCATTGCTTATACTGGTTTATGTTTGCAGCCTCAAACTAATTTTATTTTAAACCCAATTTCATCACTCATGTATATGAGTTGATGAATGACATTTTTGATATCACTTTTTATGGTGCTGAACATAGTGTGCAATCTTAGAACATGTATCAGTTAACTTTATGCTTTATTAATTTATTCCATTCAAATTTCTTGTTTTTCATGAATTCTTGTATCTGTTTCTAGTTTAACTTGAACAATTCTTCCCTTCTTTGATCTCTTATGATATTCATTTCTTCTTGTTTCTCTTCATTGGTTTTCTAAAGAGCAGACAGTTGCAGGGATTTACTATATATAATTTATTCAGTTTGTAGTTTCCAACAAACATGA

Network for GWHGAAEX017721

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
--	--	--	--	--

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	19.490
SRP064423	SRR2545915	Juvenile tuber	14.970
SRP108465	SRR5643513	five period of Gastrodia elata	9.210
	SRR5643514	five period of Gastrodia elata	9.180
	SRR5643515	five period of Gastrodia elata	8.510
	SRR5643524	five period of Gastrodia elata	8.540
	SRR5643525	five period of Gastrodia elata	7.850
	SRR5643528	five period of Gastrodia elata	6.720
	SRR5643658	five period of Gastrodia elata	7.270
	SRR5643659	five period of Gastrodia elata	8.870
	SRR5643660	five period of Gastrodia elata	9.650
	SRR5643661	five period of Gastrodia elata	8.000
	SRR5643662	five period of Gastrodia elata	10.820
	SRR5643663	five period of Gastrodia elata	9.320
	SRR5643664	five period of Gastrodia elata	9.800
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	11.050
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	7.720
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	10.360
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	14.170
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	12.010
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	16.380
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	12.850
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	13.100
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	9.560
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	9.460
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	9.640
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	9.640
SRP279888	Gastro	Gastrodia elata tuber	9.12
	Juven	Juvenile tuber	15.57
	Mother_Gastro	Mother tuber of Gastrodia elata	10.17
	Mother_Juven	Mother tuber of Juvenile	19.77