Detail information of GWHGAAEX017725/evm.TU.scaffold_86.53
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|186681923|ref|YP_001865119.1| | 3.00E-126 | histidine decarboxylase [Nostoc punctiforme PCC 73102] |
| KOG | KOG0629 | 0 | Glutamate decarboxylase and related proteins |
| nr | gi|743817661|ref|XP_010931002.1| | 0 | PREDICTED: serine decarboxylase 1 [Elaeis guineensis] |
| Swissprot | tr|Q6ESZ9|SDC1_ORYSJ | 0 | Serine decarboxylase 1 |
| trEMBL | tr|M0TA28|M0TA28_MUSAM | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr6P25320_001} |
| TAIR | AT1G43710 | 0 | Pyridoxal phosphate (PLP)-dependent transferases superfamily protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000081 | 2644177 | 2652579 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX017725
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF00282.18 | Pyridoxal_deC | 181 | 393 | 9.40E-23 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K01590 | hdc, HDC | Metabolic pathways | map01100 |
| Biosynthesis of secondary metabolites | map01110 | ||
| Histidine metabolism | map00340 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0019752 | Biological Process | carboxylic acid metabolic process |
| GO:0030170 | Molecular Function | pyridoxal phosphate binding |
| GO:0016831 | Molecular Function | carboxy-lyase activity |
| GO:0003824 | Molecular Function | catalytic activity |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 8.510 |
| SRR2545915 | Juvenile tuber | 9.620 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 12.750 |
| SRR5643514 | five period of Gastrodia elata | 12.120 | |
| SRR5643515 | five period of Gastrodia elata | 13.460 | |
| SRR5643524 | five period of Gastrodia elata | 13.200 | |
| SRR5643525 | five period of Gastrodia elata | 5.980 | |
| SRR5643528 | five period of Gastrodia elata | 5.930 | |
| SRR5643658 | five period of Gastrodia elata | 5.870 | |
| SRR5643659 | five period of Gastrodia elata | 23.320 | |
| SRR5643660 | five period of Gastrodia elata | 20.400 | |
| SRR5643661 | five period of Gastrodia elata | 23.610 | |
| SRR5643662 | five period of Gastrodia elata | 16.000 | |
| SRR5643663 | five period of Gastrodia elata | 15.410 | |
| SRR5643664 | five period of Gastrodia elata | 11.420 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 10.960 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 11.740 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 15.670 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 9.880 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 9.180 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 9.140 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 12.400 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 8.080 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 19.960 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 18.910 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 17.230 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 17.230 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 13.34 |
| Juven | Juvenile tuber | 17.43 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 6.31 | |
| Mother_Juven | Mother tuber of Juvenile | 7.24 |