Gene detail

Detail information of GWHGAAEX017728/evm.TU.scaffold_86.56

Functional Annotation

Database	Orthologs	E value	Annotation
COG	gi\|428774720\|ref\|YP_007166507.1\|	2.00E-65	ABC transporter domain-containing protein [Halothece sp. PCC 7418]
KOG	KOG0060	0	Long-chain acyl-CoA transporter, ABC superfamily (involved in peroxisome organization and biogenesis)
nr	gi\|672116823\|ref\|XP_008781581.1\|	0	PREDICTED: ABC transporter D family member 1-like [Phoenix dactylifera]
Swissprot	tr\|Q94FB9\|AB1D_ARATH	0	ABC transporter D family member 1
trEMBL	tr\|M0T4Y0\|M0T4Y0_MUSAM	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_Achr6P07310_001}
TAIR	AT4G39850	0	peroxisomal ABC transporter 1

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000081	2730375	2789362	-

Transcript Sequence
>GWHTAAEX017728 ATGCTCTCTGGGCAGTTATTACAGCTAACTGAGCATGGCCGAAATATACTTACTTACAGGAGGAGGACTCTTGCTCTAGTTGCAGGTGTATTGGCTACTGGTGGAACATTTGTTTATATGCAGTCACGAATCAGCAAAACCTGCCGAAATCAGTTTGAGAATTCCATCGATGTTACCCAGCACTTGTGTCAGAATGGAGCAGATAATAAGGAGGCTAAAATTTTGAGTAGGAAAAGAAGTGGCCTGAGAGCTCTACATGTTCTGACTGCAATTCTGCTTTCGAAAATAGGCCCTACAGGTTTAAGGATTATTGTGGGGATGGTGATTACTGCAGCTTTTAAAACTGCTTCTAGTATCAGACTTGCTAAAGTTCAAGGTTTTTTGTTTCGGGCTGCATTCTTAAGACGGGTTCCACTGTTTTTACGGCTAATTATAGAAAATCTTATTCTGTGTTTTCTTCAATCCACTTTGCATTCAACTTCAAAATACTTGACTGGTTCACTAGGCTTACGGTTCAGGAAGATATTGACTGAGCTCATACATGCTGATTATTTCGAGAATATGGTGTACTATAAAATATCCCATGTTGATCACCGGATTTCTTTTCCGGAGCAATGCATTGCAAGTGACTTGCCCAAATTCTGTTCAGAATTAAGCGATCTTGTACAAGATGATCTCACTGCGGTGATGGATGGACTGCTATATACCTGGCGTCTGTGTTCTTATGCCAGTCCAAAATATGTTCTCTGGATTCTGGCATATGTGATAGGCGCTGGTTCTGTAATCAGAAAATTTTCTCCTGCTTTTGGAAAACTGATGTCCGAGGAGCAAGAGTTAGAAGGAGACTATCGCCAGCTTCATTCAAGATTAAGAATGCATGCTGAAAGCATAGCTTTTTATGATGGTGAAACAAGGGAAGCATCCCACATAAAGAAAAAGTTTAGGACTCTTGTTAAACATATCAACCTTGTTCTCCATGACAATTGGTGGTTTGGAATGATTCAGGATTTTCTCTTGAAATACCTTGGTGCCACTGTTGCAGTCATCTTGATTATCGAACCCTTCTTTTCTGGTAATCTTAGGCCGGATTCATCTACACTTGGCAGAGCAGAAATGCTGAGCAACATCCGCTATCATACTAGTGTGATAGTATCTCTCTTTCAATCCCTGGGGACGTTATCTATCAGCTCCAGACGGTTAAATCGTCTCAGTGGGTATGCTGACCGTATTCATGAGCTTATGGTTGTGTCAAGAGAGTTAGCTAGCACTGGAAATGCTTCATCAATCCAAAATAATGCAAGCACTAATTATTTTAGCGAAGCAGATTATATTGAATTTTCTGGTGTCAAGGTAGTTACTCCTCCTGGAAATGTGTTGGTGGATGACCTCACGCTTAGGGTTGATGCAGGATCAAATCTATTGATCACTGGTCCAAATGGCAGTGGGAAGAGCTCACTTTTCCGAGTTCTTGGAGGGCTATGGCCATTGGTATCTGGACACATTGTTAAACCAGGGGTTGGGTCTGATCTTAACAAGGAGATCTTTTATGTCCCACAACGGCCATATACAGCTTTTGGAACACTTCGTGACCAGTTGATATATCCCCTTACTGCAATTCAGGAGATTGCACCACTCACCTATGATGGAATGGTTGATTTACTCAAAAATGTTGACTTGGAGTACTTGTTGGAGCGTTATCCACTGGATAAGGAAATAAACTGGGGTGATGAACTTTCTCTTGGTGAACAACAGAGGCTGGGGATGGCTAGGCTATTCTTCCATAAACCAAAGTTTGCTATTCTTGATGAGTGCACAAGTGCAGTCACAACAAATATGGAGGAACGGTTTTGTGCTAAGGTTCAAGCCATGGGGACTTCATGCATTACTATATCACACCGCCCAGCTCTAGTTGCATTTCATGACATAGTTTTATCGTTGGATGGGGAGGGAGGATGGAGTGTTCAGTACAAGAGGGATGATTCGTTAGATTGCCATGGAAATATTCCCATTTTATTGATATCATCAGAAACTGAGCGCCACACTGATGCAATCGCTGTTCAAAGAGCCTTTTCTAGCTCTGGAAAGGGTAGCAGACTTTCAAATTCTAAGGTCCCATTTTATTCTACAAAAGTATTAGCATCAGCTCCTCTTAAAGAGAATAAAGCTCAAGTACCCATTGTTCCTCAATTGCAAAGTACCCCAAGAGCTTTACCTCTAAGAGTAGCCTCAATGCTTAAAGTCTTGGTTCCAACGATGCTTGATAAACAAGGTGCACAACTCTTTGCAGTTTCTTTGCTTGTTATCTCTAGGACTTGGATATCTGATCGCATAGCTTCTTTGAATGGAACTAGTGTAAAGTTTGTGCTGGAACAGGATAAGCCAGCCTTTGTCAGATTGACTGGTATTAGTGTTCTTCAAAGTGCTGCATCATCAATAGTTGCTCCTTCTCTAAGATACATGACAGCCAAGCTTGCCCTTGGATGGAGAATTCGTTTGACTAATCATCTTTTAGGAAATTACCTGAGAAACAATTTTTTTTACAAGGTATTTCACATGTCAGATAAAAATGTTGATGCAGATCAGCGAATAACATATGATGTGGAAAAGCTGACTGCCGACCTCTCCGGATTGCTGACTGGAATGGTTAAGCCTACTGTAGATATTCTTTGGTTCACTTGGCGGATGAAGCTCCTAACTGGCCGAAGAGGAGTTGCCATATTGTATGCTTATATGCTACTTGGGCTGGGGTTTCTGAGAAGTATTGCACCTGATTTTGGCAATTTAGCTAGCAAAGAACAAGAGCTTGAGGGAACCTTTAGATTCATGCACTCTAGACTTCGAGCCCATGCTGAGTCTATTGCTTTTTTTGGTGGTGGTTCTAGAGAGAAAACTCTGGTCGATTTGAAATTTAGGGAATTAATTGATCATTCTAAGATTCTATTAAAGAAGAGATGGTTATATGTTATACTAGATGACTTTGTTACAAAACAGCTTCCTAACAATGTTACATGGGGTTTGAGCTTATTATATGCTTTGGAGCATAATGGTGATCGGGCATTGACTTCCACTCAGGGGGAGTTGGCACATGCGCTGCGATTTCTTGCTTCAGTAGTTTCACAGAGCTTCTTGGCATTTGGAGATATTCTTGAATTGCATAGGAAATTTCTTGAACTTTCTGGTGGCATAAGTCGAATTTGTGAGCTTGAGGAGTTACTTGATGTCTCTCAAAGTGAAGCCCCTCGGCCTACTGTGTCGGTATCTTCAGAAATGAACGCCGTTCCCAATCATGATATTATTTCCTTTTCTAACGTTGATGTAATTACGCCGGTTCAGAAGCTGTTGGCCAGAAAGTTAACTTGTGATGTTGTGCAAGGGGAAAGCCTTCTTGTTACTGGGCCTAATGGAAGTGGTAAAAGCTCCATCTTTAGAATACTTTGGGGTTTGTGGCCTGTTGTAAGCGGAACTCTTTCGAAACCTTCCCAAAATATCAATAAGCCACATACAAGATGCGGCCTACTTTGTATACCTCAGAGGCCTTATACTTGTTTGGGGACTTTAAGGGATCAAATCATCTATCCACTTTCTCGTGAAGATGTCGAGGAAGGGATGCGGAGTACAGGCATCTCTTCAAACGTTGCTGATCTTCTGGATGCGCGCTTGAAGTCAATTCTTGAGTGTGTCCGATTGGTCTATCTTTTGGACAGAGAAGGTTGGGATTCATGTCCCAACTGGGAAGACATTCTTTCATTAGGCGAGCAGCAAAGGCTTGGCATGGCGCGTTTATTCTTCCATCATCCTAAATTTGGTATTCTCGATGAGTGCACCAACGCAACAAGTGTAGACATCGAGGAACACCTGTACAAGCTTGCCAAGGAAATGGACATAACGGTCATCACATCCTCTCAACGTCCCGCTTTAATTCCATTTCATTCCAAGGAGCTGCGCATGATTGATGGTGAGGGTAATTGGGAATTATGCTCAATTATCAATGAATAA

Network for GWHGAAEX017728

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF06472.14	ABC_membrane_2	79	356	4.30E-79
PF00005.26	ABC_tran	461	606	1.20E-17
PF06472.14	ABC_membrane_2	739	1009	3.60E-80
PF00005.26	ABC_tran	1117	1276	7.30E-16

Protein Sequence

>GWHPAAEX017728
MLSGQLLQLTEHGRNILTYRRRTLALVAGVLATGGTFVYMQSRISKTCRNQFENSIDVTQHLCQNGADNKEAKILSRKRSGLRALHVLTAILLSKIGPTGLRIIVGMVITAAFKTASSIRLAKVQGFLFRAAFLRRVPLFLRLIIENLILCFLQSTLHSTSKYLTGSLGLRFRKILTELIHADYFENMVYYKISHVDHRISFPEQCIASDLPKFCSELSDLVQDDLTAVMDGLLYTWRLCSYASPKYVLWILAYVIGAGSVIRKFSPAFGKLMSEEQELEGDYRQLHSRLRMHAESIAFYDGETREASHIKKKFRTLVKHINLVLHDNWWFGMIQDFLLKYLGATVAVILIIEPFFSGNLRPDSSTLGRAEMLSNIRYHTSVIVSLFQSLGTLSISSRRLNRLSGYADRIHELMVVSRELASTGNASSIQNNASTNYFSEADYIEFSGVKVVTPPGNVLVDDLTLRVDAGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIVKPGVGSDLNKEIFYVPQRPYTAFGTLRDQLIYPLTAIQEIAPLTYDGMVDLLKNVDLEYLLERYPLDKEINWGDELSLGEQQRLGMARLFFHKPKFAILDECTSAVTTNMEERFCAKVQAMGTSCITISHRPALVAFHDIVLSLDGEGGWSVQYKRDDSLDCHGNIPILLISSETERHTDAIAVQRAFSSSGKGSRLSNSKVPFYSTKVLASAPLKENKAQVPIVPQLQSTPRALPLRVASMLKVLVPTMLDKQGAQLFAVSLLVISRTWISDRIASLNGTSVKFVLEQDKPAFVRLTGISVLQSAASSIVAPSLRYMTAKLALGWRIRLTNHLLGNYLRNNFFYKVFHMSDKNVDADQRITYDVEKLTADLSGLLTGMVKPTVDILWFTWRMKLLTGRRGVAILYAYMLLGLGFLRSIAPDFGNLASKEQELEGTFRFMHSRLRAHAESIAFFGGGSREKTLVDLKFRELIDHSKILLKKRWLYVILDDFVTKQLPNNVTWGLSLLYALEHNGDRALTSTQGELAHALRFLASVVSQSFLAFGDILELHRKFLELSGGISRICELEELLDVSQSEAPRPTVSVSSEMNAVPNHDIISFSNVDVITPVQKLLARKLTCDVVQGESLLVTGPNGSGKSSIFRILWGLWPVVSGTLSKPSQNINKPHTRCGLLCIPQRPYTCLGTLRDQIIYPLSREDVEEGMRSTGISSNVADLLDARLKSILECVRLVYLLDREGWDSCPNWEDILSLGEQQRLGMARLFFHHPKFGILDECTNATSVDIEEHLYKLAKEMDITVITSSQRPALIPFHSKELRMIDGEGNWELCSIINE

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0055085	Biological Process	transmembrane transport
GO:0016887	Molecular Function	ATPase activity
GO:0005524	Molecular Function	ATP binding
GO:0042626	Molecular Function	ATPase activity, coupled to transmembrane movement of substances
GO:0016021	Cellular Component	integral component of membrane

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	39.280
SRP064423	SRR2545915	Juvenile tuber	26.830
SRP108465	SRR5643513	five period of Gastrodia elata	14.640
	SRR5643514	five period of Gastrodia elata	13.460
	SRR5643515	five period of Gastrodia elata	14.140
	SRR5643524	five period of Gastrodia elata	14.230
	SRR5643525	five period of Gastrodia elata	21.660
	SRR5643528	five period of Gastrodia elata	18.760
	SRR5643658	five period of Gastrodia elata	25.560
	SRR5643659	five period of Gastrodia elata	16.990
	SRR5643660	five period of Gastrodia elata	19.200
	SRR5643661	five period of Gastrodia elata	17.110
	SRR5643662	five period of Gastrodia elata	15.370
	SRR5643663	five period of Gastrodia elata	17.530
	SRR5643664	five period of Gastrodia elata	17.390
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	18.060
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	12.850
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	18.100
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	23.080
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	27.160
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	32.710
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	22.570
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	27.540
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	18.680
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	21.360
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	16.310
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	16.310
SRP279888	Gastro	Gastrodia elata tuber	19.43
	Juven	Juvenile tuber	19.70
	Mother_Gastro	Mother tuber of Gastrodia elata	19.18
	Mother_Juven	Mother tuber of Juvenile	25.41