Gene detail

Detail information of GWHGAAEX017731/evm.TU.scaffold_86.59

Functional Annotation

Database	Orthologs	E value	Annotation
nr	gi\|695033730\|ref\|XP_009404348.1\|	1.93E-111	PREDICTED: probable mediator of RNA polymerase II transcription subunit 26c [Musa acuminata subsp. malaccensis]
Swissprot	tr\|F4KFC7\|MD26C_ARATH	8.00E-72	Probable mediator of RNA polymerase II transcription subunit 26c
trEMBL	tr\|M0T6K7\|M0T6K7_MUSAM	2.00E-116	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_Achr6P13090_001}
TAIR	AT5G09850	1.00E-69	Transcription elongation factor (TFIIS) family protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000081	3008858	3011390	+

Transcript Sequence
>GWHTAAEX017731 GATAATAAAATCCATCCCCCAACAAATTAAATATACAAAATATACGCAAACCGCTGGATCCCACATTCCCTAATCCGTTCTCTTCTCTATCTATCCCCCCTTCCGTCTGAATATCTTTCAGGAAAAATTAAAACAAAGATACCCCCACTTGATCATCTGGGGTTGGTTTTTTTCGATCCGCAGATAACTTTCTCAGGTTTGCAAGCTGAAGAAGGTCGGATCGGCCGTCTCCTTTGAATGAACACTCGGGCTTGAATGAAATCAGTCGAATCTTGTTGGGGAACGAACCCTTTGATCTAAGGTTTCAGAACCGAAGGCTGAAGGAGCTGGAGATGAGTTTTGAGGATCTCAAGTCGGTACTGAGAAGCACGGGCGTGGATCTATGGACTCTGATCGAGACAGCGATCTCCCTCGCTGCTGCCGAGCACGAAACCGAACTCAGGGCTCGTAGAGATGGGATCGTTGGGAGGCTTTACTCACTGCCAGATGGACGCTGCAAAAGGTGTGATGGGAAGATGGAGGCCTCACCATCAAAGGAGAAAGCAGATGAAGAACCTGTTGTCGATCATGTGGAAGATAATGGGGTGGATGATGAGAGGAATTATCATTCCATCGATGACGTGCAGATCAAGATTCTCGCCATCAAGGATTTCCTCGACGATCCTGATCAGCCTGAGGATTCTCTGATTAATCTACTTCAAAATCTCGCTGACATGGAAATCAACTTTAAAGCTCTCAAGGAAACCGATATTGGTAGGCATGTGAACAGTTTGCGGAAGCATCCATCATCTGAAGTGAAGAGAATTGTAAAACAGCTCGTTAGGAAGTGGAAGGAAACCGTGGACGAGTGGGTGAAATCTAATTCAGCCAACGATCACTCATCTCCCGCTAACATCACCGATGGAGACTCGCCCCAGCTAATGCCAGCCAAGAGCAACCAGAACGGACACCAGACTCAGGATTTCATCCATTCTTCTCCCAATCCGCCCACTCAGAACGGCAACTGGCAGCCAGATAGAAATGGCTCAGAATCAGCAGAACTAAAGGCGAGATCTGCTCCTCGCGGCAGAGAAGCTTCAACGAAGCCTTTCAACTCCAACGCAACAACAGCTAAAGAGAGGGATAAGGAAAGCTTGCTAGACCCTGATAGGTTGGCATCAGCGAGGAAGAGACTTCAAGAAAATTATCAGGAAATCGAAAATGCGAAAAGGCAGAGGACGATACAGGTAATGGATATCCACGACATTCCCAAGCCTAAAAATGCCTTCTTGGGGCGGAGCAAAGCCGGATTTCATGCTAATAAGCGCTGCTGAGCTGAGCTGAGCTGAGCTGAACTGTATTGGACTGAACTGGGATGAAGTTGGTTGGAGCCATAGAGAGAGGCCTTTAATTCTATTGTTTTCCCTCATCCAAAGATGGATTTTGGAGACCACTTCCACACTTATTTTTTCCTAGGAATATTTTATTCGGATTTTATGTTTTAGAGTAATTATCATCGGTTAACTAGTAGTAGCTATCGTTGTCTGCCATTTGTGAATATGTATTGTTGCTTCATCCTGTCATGCCCCAAATGTAGACTTTTTATGCAATTTAAAGTTGCTCGAAGATTTGTATTCAATCATTTTTAAAAACGAATACCGCAATAAATACAGAAAAAATATTATTTAGATCCCAAATGATTTTTCAAAAGAAAAGATTAGATGTCAAAAATAGATTTAATTCTAATACTCTTAGACAAATTATTTTGCACTTATTTGCGTGCTATGTATCAAAAATTTATTAAATATTTGCGCAGCACTTAAAATGTAATTTTCTTAACGTGC

Network for GWHGAAEX017731

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF08711.10	Med26	121	168	1.60E-12

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	IWS1

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0005634	Cellular Component	nucleus

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	65.630
SRP064423	SRR2545915	Juvenile tuber	78.450
SRP108465	SRR5643513	five period of Gastrodia elata	82.410
	SRR5643514	five period of Gastrodia elata	66.150
	SRR5643515	five period of Gastrodia elata	79.490
	SRR5643524	five period of Gastrodia elata	65.480
	SRR5643525	five period of Gastrodia elata	180.320
	SRR5643528	five period of Gastrodia elata	107.800
	SRR5643658	five period of Gastrodia elata	141.080
	SRR5643659	five period of Gastrodia elata	68.540
	SRR5643660	five period of Gastrodia elata	67.940
	SRR5643661	five period of Gastrodia elata	66.450
	SRR5643662	five period of Gastrodia elata	85.750
	SRR5643663	five period of Gastrodia elata	85.750
	SRR5643664	five period of Gastrodia elata	94.680
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	66.480
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	67.180
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	61.580
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	65.550
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	72.810
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	74.660
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	56.460
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	62.790
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	45.930
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	51.210
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	70.780
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	70.780
SRP279888	Gastro	Gastrodia elata tuber	82.21
	Juven	Juvenile tuber	75.58
	Mother_Gastro	Mother tuber of Gastrodia elata	132.80
	Mother_Juven	Mother tuber of Juvenile	116.71