Gene detail

Detail information of GWHGAAEX017733/evm.TU.scaffold_86.62

Functional Annotation

Database	Orthologs	E value	Annotation
COG	gi\|108802877\|ref\|YP_642814.1\|	8.00E-32	serine/threonine protein kinase [Rubrobacter xylanophilus DSM 9941]
KOG	KOG0032	0	Ca2+/calmodulin-dependent protein kinase, EF-Hand protein superfamily
nr	gi\|695065941\|ref\|XP_009379843.1\|	0	PREDICTED: calcium-dependent protein kinase SK5-like [Musa acuminata subsp. malaccensis]
Swissprot	tr\|P28583\|CDPK_SOYBN	0	Calcium-dependent protein kinase SK5
trEMBL	tr\|M0RIM0\|M0RIM0_MUSAM	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_Achr10P15950_001}
TAIR	AT1G35670	0	calcium-dependent protein kinase 2

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000081	3132336	3164279	+

Transcript Sequence
>GWHTAAEX017733 TATTGTAAAATTTTTCATCTGCTGACATTTTTTGCGGTTAGCTTCTTCTTACTCCCATCTCGTCAGTCATTCAACGGTGCATTTGTATTTCTTCCATAAAACCTTCTTTTTGCTGAAATCTCGTTCTATAAAAAAATCTACCAATCCATTTCCATTCCTTGAAGCAGCCTGAAACACCAGATCACGAAACCCTAACTCCTATTTTACCACTAATCTGTCCAATAAAAAAGTACTCACTCCCATTCCAAGTAATCGAAACCCTCGCCTTTCTTTCCCAATGAAGCAATCTTTCCCCTATCAACCTTCTGCTTCGTCGTCAAAACCTTCTGCAGTTCTTCCTAACAAAACCTCCAATCTCCGAGACCACTACAAGATTGGTCGGAAGCTCGGACAGGGCCAGTTTGGCACAACTTACCTCTGCGTGGATAAGTTGGATGGCAAGGAGTACGCCTGCAAATCGATTCCCAAGAGGAAGCTGCTGTGCAGAGAAGACTATGAGGACGTTCGGCGCGAGATCCAGATCATGCATCATCTATCGGAGCATCCTAATGTGGTGAGAATCAAAGGGACGTATGAGGATTTGCTCTTTGTGCATTTAGTCATGGAGTTATGCGCTGGCGGGGAGTTGTTCGATAGGATTATACAAAAGGGGCATTACAGCGAGCGGAAGGCTGCTCAGCTTATCAAGACCATTGTTGGCGTCGTTGAGGCCTGCCATTCTTTGGGCGTTATGCATCGGGATCTCAAGCCTGAAAATTTTCTTTTCTCAAATGCGGACGAGGATGCGTCACTCAAGGCAACGGATTTTGGCCTCTCGGTTTTCTTCAAGCCAGGTGAAATGCTTTCTGATGTAGTGGGAAGCCCCTATTATGTTGCACCTGAAGTACTTCGAAGATTTTATAGCCTTGAAGCGGATGTGTGGAGTGCTGGCGTGATCTTGTATATTTTGCTCTGCGGGGTTCCACCATTCTGGGCAGAAACTGAAGCGGGGATCTTCAACCAGATTATACAAGGACATCTAGATTTTGAATCAGAACCATGGCCCGAAATTTCTAATAGTGCTAAAGATTTGATCTGTAATATGCTTAATCGAGATCCGAAAACGCGATTTACAGCTCACCAAGTTCTTTGTCATCCTTGGATTGTCGATGACAGAGTAGCACCTGACAGGCCATTAGATTCTGCTGTTTTATCACGCTTGAAGCAGTTCTCTGCTATGAATAAGCTTAAAAAGATGGCTTTACGGGTTATAGCAGAAAAATTGTCTGAAGAAGAGATTGGAGGGCTTCGAGAGTTGTTCAGAATGATTGACACAGATAATAGTGGTACAATAACATTCGATGAACTAAAAGATGGCTTGAGAAGAGTGGGCTCTGAACTGACTGAAAATGAGATCCATGTGCTAATGAATGCGGCTGATATTGACAACAGTGGCACGATAGAGTATGGTGAATTTCTAGCTGCTACTGTGCACTTGAATAAGCTAGAGAGGGAAGAAAACTTGGTATCGGCATTTTCTTACTTTGACAAAGATGGAAGTGGTTATATAACCATCGATGAACTCTCTGAAGCTTGCCGAGAATTTGGACTCAATGATGGCCATCTCGATGAAATGATCAAAGAGATTGATCAAAACAATGACGGACAGATAGATTACAGCGAGTTTGTTGCTATGATGAGAAAAGGAAATGGAGCTGTTGGTAGGAGGACAATGACAAGTAGTTATTGTTTGAATTTGGGTGATGCTTTGAAGGCTGCAGAGCAATAGAACATGACAGCATGACTGCATTATTTTGGTAGTTTCAAGCAGCAAGCATGTGTAGAAAAAGTAAATTATGGGTTCTTTATTGGCATTCCTGTCCTGGAAGCCAAAGATTGTGATTTGAGGTGGCTCCTGCCTCTTACGATACAGAGATGAGGGGCGCCATCGGTTTAATGACTGAAGAAAATTTTCTAATTTGGTTGCTCCTGCAAATGTAATGTGAAATATTTATTTATAGTATCTTGTTGGTAGCAGGATATTGTATCATCAAAACATTTTGCGTGCGCTATGAATATGTTATATCAATACTGATTACTGTCCCTAAATATTTTTTTGACTTAGCAATTCTGTGCCAATATTGGGCGTTAAAACTTATTTCAGGTTTGAGTTTGAGCATTGCTGAGTTGTTTTGTGACAAATATTGGATGGGTCTGATTTGTGTTGCACAATGAAATCCAATTATATTCTAAC

Network for GWHGAAEX017733

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00069.24	Pkinase	31	289	2.70E-74
PF13499.5	EF-hand_7	337	397	3.60E-11
PF13499.5	EF-hand_7	409	468	1.80E-12

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	CAMK_CDPK

KEGG pathway

KO	Enzyme	pathway	mapID
K13412	CPK	Plant-pathogen interaction	map04626

Gene Ontology

GO term	Ontology	Name
GO:0006468	Biological Process	protein phosphorylation
GO:0005524	Molecular Function	ATP binding
GO:0004672	Molecular Function	protein kinase activity
GO:0005509	Molecular Function	calcium ion binding

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	55.200
SRP064423	SRR2545915	Juvenile tuber	58.520
SRP108465	SRR5643513	five period of Gastrodia elata	37.990
	SRR5643514	five period of Gastrodia elata	34.130
	SRR5643515	five period of Gastrodia elata	33.740
	SRR5643524	five period of Gastrodia elata	36.640
	SRR5643525	five period of Gastrodia elata	45.050
	SRR5643528	five period of Gastrodia elata	38.090
	SRR5643658	five period of Gastrodia elata	46.270
	SRR5643659	five period of Gastrodia elata	46.070
	SRR5643660	five period of Gastrodia elata	43.880
	SRR5643661	five period of Gastrodia elata	41.320
	SRR5643662	five period of Gastrodia elata	42.530
	SRR5643663	five period of Gastrodia elata	42.980
	SRR5643664	five period of Gastrodia elata	42.410
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	39.470
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	34.770
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	38.770
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	46.680
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	40.980
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	46.900
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	39.170
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	41.010
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	37.800
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	37.890
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	44.440
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	44.440
SRP279888	Gastro	Gastrodia elata tuber	41.49
	Juven	Juvenile tuber	60.21
	Mother_Gastro	Mother tuber of Gastrodia elata	29.25
	Mother_Juven	Mother tuber of Juvenile	44.64