Gene detail

Detail information of GWHGAAEX017740/evm.TU.scaffold_86.73

Functional Annotation

Database	Orthologs	E value	Annotation
nr	gi\|743764713\|ref\|XP_010912567.1\|	5.40E-147	PREDICTED: scarecrow-like protein 21 [Elaeis guineensis]
Swissprot	tr\|Q9LF53\|RGL3_ARATH	4.00E-53	DELLA protein RGL3
trEMBL	tr\|V7BDN6\|V7BDN6_PHAVU	2.00E-128	Uncharacterized protein {ECO:0000313\|EMBL:ESW15655.1}
TAIR	AT5G17490	1.00E-52	RGA-like protein 3

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000081	3697385	3698980	-

Transcript Sequence
>GWHTAAEX017740 AAAAAAAAATTGTTGGTTGATTGATTGCAGCGATAAAGAGATGCAGGAAGAGGCAGGGGAGGATCAGCTGAGTCTGAGACTAAGCATTGGGAGCGGCGGCACAAAGAAAAGGAAGAGACTGGACGAAGGCCGCAATGAAAAGTACATGGCGGTTCTGCTGCAGGCACGTGAGCGGATGCTGCGCCATGCCAGCAGCAGCAGCAGGCTCAGCGGGAACGTCGATGAGAAGGGGGTACAGCTGATTCGCCTCCTCCTGATATGCGCCACCGCGGTGGACAGAAGCGAGCTGTGCTCCGCGGCCGAGCCGATGCGGCAGCTGTACCGCCGGGCGTCCGTGTGCGGCAGCCCCATCGAGCGCGTGGCCTCCTATTTCGCTGACGGTCTCATGGCCAAGCTGATGCGGCCAAAGGAATTCGGAGCTTTGCCGGCCGAAGAGGAGTTCTCTGCTTTCACGGCGCTCTATCGCTCCACCCCTTACTGCCAGTTCGCGCACTTCACGGCCAACCAAGCCATAATCGAGGCCTTCGAAGAAGACGAGCGGTGGAACGGGGGATGCCTCCATGTCATCAACCTTGACGTGTCCTACGGCCTGCAGTGGCCTTCCTTGATCCAATCTCTGGCCGACAAAGCGACGATGAATCGTAGCACAATCAATCTGCGCATCACCAGCTTCGGCGGTGATGAATCGGAGCTGAGGGACACGGAGGCGAGGCTCTCCAGCTTCGCCGCTGGGTGCCGCAGCCTCGTCTTCGAGTTCGATGGGAAGCTGAGAGGGGAGAAGATTTCGATTACTAAGAATGCGACTCTGGCCGTGAACCTCGTCTTCTATCTCCACACTCTGAAGAGCCGCTCCGAAATATGCGCGGCGCTTGCGCAGATATGCGCGTTAGGTCCTTCAGTGGTGACTTTGGTGGAGAAGGAAGGAACAAAGGGGAATCACAGCGGGGGATTCCTGCCCAGATTCATTGAGACTCTGCACTACTTTGCTGCCATGTTCGATTCTATGGATGACTGCCTGCCTTCGGGGAGCAGAGACAGGATGAGGATTGAAAAGAGCCTTTTCGGGAGGGACATCAGAAATGCGGTGGCCGGTGAGGAAGGAGGATGGAGATACGAGAGGCTGGAGGCTTGGAAGGCGCTCATGGAGAGGAGCAGATTCCAAGCTGTGAGGATGAGCTCCAGGTCCGTCAGCCAGGCCAAGCTTCTTCTCAAGATTAAGAACCACTGCTCTGCGATGGATGACCGTGGAAACGGAACGGGCTTCAGAATAGCTGAGAGGGACCAAGGGAAGGCCCTCTCCTTGGGATGGCAGCATAAGCATTTGATCACTGCAACTGCCTGGCGACCAGCTTCCTGATCTTATCTATACATTTTCATTTTTCTTCTGTTCTGTCTTCTTTATACACTTGTTCATACCCCACAGCAGCCTTCATGTAACAAAATTTACCCCACCCCCTGATTAGTTCACATAATTAATAGTTGGTGAATGCCAGAGAGCCCACTAGATTTTATTAGAATGTATGATTAAAGCTTGAATGAAAGAGGAGGAATATCGTAAGCATTACTGAAAATATACTCGCGATAACCATTAAAAAG

Network for GWHGAAEX017740

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
Module4

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF03514.13	GRAS	67	435	4.90E-81

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	GRAS

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	9.750
SRP064423	SRR2545915	Juvenile tuber	3.160
SRP108465	SRR5643513	five period of Gastrodia elata	25.080
	SRR5643514	five period of Gastrodia elata	29.660
	SRR5643515	five period of Gastrodia elata	26.040
	SRR5643524	five period of Gastrodia elata	31.840
	SRR5643525	five period of Gastrodia elata	1.870
	SRR5643528	five period of Gastrodia elata	1.440
	SRR5643658	five period of Gastrodia elata	0.850
	SRR5643659	five period of Gastrodia elata	5.380
	SRR5643660	five period of Gastrodia elata	3.220
	SRR5643661	five period of Gastrodia elata	5.270
	SRR5643662	five period of Gastrodia elata	8.210
	SRR5643663	five period of Gastrodia elata	5.800
	SRR5643664	five period of Gastrodia elata	1.640
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	26.610
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	42.720
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	35.110
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	21.780
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	43.670
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	68.420
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	42.510
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	38.730
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	41.850
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	82.470
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	51.830
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	51.830
SRP279888	Gastro	Gastrodia elata tuber	1.55
	Juven	Juvenile tuber	19.93
	Mother_Gastro	Mother tuber of Gastrodia elata	134.31
	Mother_Juven	Mother tuber of Juvenile	18.03