Detail information of GWHGAAEX017741/evm.TU.scaffold_86.74
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|326799830|ref|YP_004317649.1| | 3.00E-27 | polynucleotide adenylyltransferase [Sphingobacterium sp. 21] |
| KOG | KOG2159 | 0 | tRNA nucleotidyltransferase/poly(A) polymerase |
| nr | gi|743817056|ref|XP_010930817.1| | 0 | PREDICTED: putative CCA tRNA nucleotidyltransferase 2 [Elaeis guineensis] |
| trEMBL | tr|M0T7Y3|M0T7Y3_MUSAM | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr6P17850_001} |
| TAIR | AT1G22660 | 0 | Polynucleotide adenylyltransferase family protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000081 | 3795329 | 3895046 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX017741
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF01743.19 | PolyA_pol | 93 | 230 | 3.60E-32 |
| PF12627.6 | PolyA_pol_RNAbd | 258 | 321 | 9.80E-05 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0006396 | Biological Process | RNA processing |
| GO:0016779 | Molecular Function | nucleotidyltransferase activity |
| GO:0003723 | Molecular Function | RNA binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 71.960 |
| SRR2545915 | Juvenile tuber | 59.810 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 13.720 |
| SRR5643514 | five period of Gastrodia elata | 13.960 | |
| SRR5643515 | five period of Gastrodia elata | 14.740 | |
| SRR5643524 | five period of Gastrodia elata | 11.890 | |
| SRR5643525 | five period of Gastrodia elata | 12.400 | |
| SRR5643528 | five period of Gastrodia elata | 18.770 | |
| SRR5643658 | five period of Gastrodia elata | 15.890 | |
| SRR5643659 | five period of Gastrodia elata | 24.620 | |
| SRR5643660 | five period of Gastrodia elata | 31.430 | |
| SRR5643661 | five period of Gastrodia elata | 24.930 | |
| SRR5643662 | five period of Gastrodia elata | 33.420 | |
| SRR5643663 | five period of Gastrodia elata | 30.120 | |
| SRR5643664 | five period of Gastrodia elata | 32.800 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 23.100 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 22.750 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 23.570 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 24.750 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 23.190 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 21.140 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 20.790 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 20.430 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 21.960 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 19.230 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 21.670 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 21.670 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 38.10 |
| Juven | Juvenile tuber | 26.11 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 18.08 | |
| Mother_Juven | Mother tuber of Juvenile | 21.22 |