Detail information of GWHGAAEX017743/evm.TU.scaffold_86.76


Functional Annotation

DatabaseOrthologsE valueAnnotation
nrgi|743817013|ref|XP_010930809.1|0PREDICTED: E3 ubiquitin-protein ligase CHFR [Elaeis guineensis]
trEMBLtr|M0TA46|M0TA46_MUSAM0Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr6P25500_001}
TAIRAT1G475702.00E-65RING/U-box superfamily protein

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000008139573984031317+
Transcript Sequence

Network for GWHGAAEX017743

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00097.24zf-C3HC41281760.00013
Protein Sequence

Gene family

Gene familysubfamily
Ubiquitin FamilyRING

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0046872Molecular Functionmetal ion binding

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms43.880
SRR2545915Juvenile tuber57.660
SRP108465SRR5643513five period of Gastrodia elata29.690
SRR5643514five period of Gastrodia elata32.920
SRR5643515five period of Gastrodia elata30.580
SRR5643524five period of Gastrodia elata29.560
SRR5643525five period of Gastrodia elata37.740
SRR5643528five period of Gastrodia elata38.620
SRR5643658five period of Gastrodia elata50.450
SRR5643659five period of Gastrodia elata28.590
SRR5643660five period of Gastrodia elata33.410
SRR5643661five period of Gastrodia elata30.370
SRR5643662five period of Gastrodia elata35.570
SRR5643663five period of Gastrodia elata33.570
SRR5643664five period of Gastrodia elata35.730
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_131.500
SRR6049655Rhizomagastrodiae_C368-T10_good_130.380
SRR6049656Rhizomagastrodiae_C368-T07_good_133.060
SRR6049657Rhizomagastrodiae_C368-T07_good_131.100
SRR6049658Rhizomagastrodiae_C368-T04_good_137.220
SRR6049659Rhizomagastrodiae_C368-T04_good_138.880
SRR6049660Rhizomagastrodiae_C368-T01_good_132.920
SRR6049661Rhizomagastrodiae_C368-T04_good_134.910
SRR6049662Rhizomagastrodiae_C368-T01_good_130.150
SRR6049663Rhizomagastrodiae_C368-T01_good_132.100
SRR6049664Rhizomagastrodiae_C368-T10_good_134.040
SRR6049665Rhizomagastrodiae_C368-T10_good_134.040
SRP279888GastroGastrodia elata tuber 42.07
JuvenJuvenile tuber38.66
Mother_GastroMother tuber of Gastrodia elata 33.00
Mother_JuvenMother tuber of Juvenile 34.06