Detail information of GWHGAAEX017751/evm.TU.scaffold_87.2
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|347754895|ref|YP_004862459.1| | 8.00E-96 | 3-deoxy-7-phosphoheptulonate synthase [Candidatus Chloracidobacterium thermophilum B] |
| nr | gi|694446041|ref|XP_009349412.1| | 0 | PREDICTED: 2-dehydro-3-deoxyphosphooctonate aldolase [Pyrus x bretschneideri] |
| Swissprot | tr|O50044|KDSA_PEA | 0 | 2-dehydro-3-deoxyphosphooctonate aldolase |
| trEMBL | tr|A0A067KNL7|A0A067KNL7_JATCU | 0 | Uncharacterized protein {ECO:0000313|EMBL:KDP37811.1} |
| TAIR | AT1G79500 | 2.00E-178 | Aldolase-type TIM barrel family protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000088 | 100360 | 109292 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX017751
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF00793.19 | DAHP_synth_1 | 15 | 268 | 1.30E-60 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K01627 | kdsA | Metabolic pathways | map01100 |
| Lipopolysaccharide biosynthesis | map00540 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0009058 | Biological Process | biosynthetic process |
| GO:0008676 | Molecular Function | 3-deoxy-8-phosphooctulonate synthase activity |
| GO:0003824 | Molecular Function | catalytic activity |
| GO:0005737 | Cellular Component | cytoplasm |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 58.130 |
| SRR2545915 | Juvenile tuber | 59.510 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 49.480 |
| SRR5643514 | five period of Gastrodia elata | 39.000 | |
| SRR5643515 | five period of Gastrodia elata | 39.340 | |
| SRR5643524 | five period of Gastrodia elata | 40.970 | |
| SRR5643525 | five period of Gastrodia elata | 50.260 | |
| SRR5643528 | five period of Gastrodia elata | 64.830 | |
| SRR5643658 | five period of Gastrodia elata | 43.730 | |
| SRR5643659 | five period of Gastrodia elata | 76.640 | |
| SRR5643660 | five period of Gastrodia elata | 66.040 | |
| SRR5643661 | five period of Gastrodia elata | 79.720 | |
| SRR5643662 | five period of Gastrodia elata | 66.810 | |
| SRR5643663 | five period of Gastrodia elata | 60.200 | |
| SRR5643664 | five period of Gastrodia elata | 54.640 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 50.020 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 68.910 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 60.420 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 45.440 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 49.500 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 42.780 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 51.930 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 47.740 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 62.090 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 60.020 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 75.850 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 75.850 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 67.63 |
| Juven | Juvenile tuber | 43.50 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 55.70 | |
| Mother_Juven | Mother tuber of Juvenile | 33.24 |