Detail information of GWHGAAEX017757/evm.TU.scaffold_87.10
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| KOG | KOG4197 | 1.00E-62 | FOG: PPR repeat |
| nr | gi|694996672|ref|XP_009395251.1| | 3.30E-138 | PREDICTED: putative pentatricopeptide repeat-containing protein At3g23330 [Musa acuminata subsp. malaccensis] |
| Swissprot | tr|Q9LIQ7|PP252_ARATH | 4.00E-63 | Pentatricopeptide repeat-containing protein At3g24000, mitochondrial (Precursor) |
| trEMBL | tr|M0RYA1|M0RYA1_MUSAM | 1.00E-138 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr1P08920_001} |
| TAIR | AT3G24000 | 1.00E-62 | Tetratricopeptide repeat (TPR)-like superfamily protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000088 | 439871 | 441331 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX017757
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module4 |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF01535.19 | PPR | 36 | 62 | 0.0015 |
| PF01535.19 | PPR | 111 | 132 | 1 |
| PF01535.19 | PPR | 138 | 165 | 0.13 |
| PF01535.19 | PPR | 250 | 279 | 2.10E-06 |
| PF01535.19 | PPR | 289 | 313 | 0.34 |
| PF01535.19 | PPR | 322 | 343 | 0.51 |
| PF01535.19 | PPR | 398 | 421 | 0.31 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0005515 | Molecular Function | protein binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 11.980 |
| SRR2545915 | Juvenile tuber | 8.520 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 7.350 |
| SRR5643514 | five period of Gastrodia elata | 6.670 | |
| SRR5643515 | five period of Gastrodia elata | 5.950 | |
| SRR5643524 | five period of Gastrodia elata | 5.250 | |
| SRR5643525 | five period of Gastrodia elata | 2.080 | |
| SRR5643528 | five period of Gastrodia elata | 1.430 | |
| SRR5643658 | five period of Gastrodia elata | 1.160 | |
| SRR5643659 | five period of Gastrodia elata | 10.220 | |
| SRR5643660 | five period of Gastrodia elata | 10.670 | |
| SRR5643661 | five period of Gastrodia elata | 10.560 | |
| SRR5643662 | five period of Gastrodia elata | 11.670 | |
| SRR5643663 | five period of Gastrodia elata | 8.750 | |
| SRR5643664 | five period of Gastrodia elata | 9.210 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 8.290 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 5.950 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 10.330 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 6.570 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 5.940 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 6.330 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 7.860 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 8.390 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 14.220 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 10.030 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 10.710 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 10.710 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 11.29 |
| Juven | Juvenile tuber | 7.19 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 2.27 | |
| Mother_Juven | Mother tuber of Juvenile | 2.29 |