Detail information of GWHGAAEX017758/evm.TU.scaffold_87.11
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| KOG | KOG0240 | 0 | Kinesin (SMY1 subfamily) |
| nr | gi|672135201|ref|XP_008791266.1| | 0 | PREDICTED: armadillo repeat-containing kinesin-like protein 2 [Phoenix dactylifera] |
| Swissprot | tr|Q5VQ09|ARK2_ORYSJ | 0 | Armadillo repeat-containing kinesin-like protein 2 |
| trEMBL | tr|M0RXH0|M0RXH0_MUSAM | 0 | Kinesin-like protein {ECO:0000256|RuleBase:RU000394} |
| TAIR | AT1G01950 | 0 | armadillo repeat kinesin 2 |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000088 | 510354 | 591440 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX017758
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF00225.22 | Kinesin | 66 | 406 | 7.20E-95 |
| PF00514.22 | Arm | 685 | 722 | 7.70E-06 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0007018 | Biological Process | microtubule-based movement |
| GO:0005524 | Molecular Function | ATP binding |
| GO:0008017 | Molecular Function | microtubule binding |
| GO:0005515 | Molecular Function | protein binding |
| GO:0003777 | Molecular Function | microtubule motor activity |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 12.240 |
| SRR2545915 | Juvenile tuber | 25.830 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 14.780 |
| SRR5643514 | five period of Gastrodia elata | 16.500 | |
| SRR5643515 | five period of Gastrodia elata | 12.970 | |
| SRR5643524 | five period of Gastrodia elata | 14.850 | |
| SRR5643525 | five period of Gastrodia elata | 3.550 | |
| SRR5643528 | five period of Gastrodia elata | 2.700 | |
| SRR5643658 | five period of Gastrodia elata | 3.090 | |
| SRR5643659 | five period of Gastrodia elata | 7.240 | |
| SRR5643660 | five period of Gastrodia elata | 7.020 | |
| SRR5643661 | five period of Gastrodia elata | 6.980 | |
| SRR5643662 | five period of Gastrodia elata | 4.240 | |
| SRR5643663 | five period of Gastrodia elata | 4.200 | |
| SRR5643664 | five period of Gastrodia elata | 3.670 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 13.230 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 13.590 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 12.970 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 12.020 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 11.170 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 10.420 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 10.310 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 11.690 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 15.480 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 9.930 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 16.180 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 16.180 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 5.61 |
| Juven | Juvenile tuber | 9.18 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 7.62 | |
| Mother_Juven | Mother tuber of Juvenile | 8.97 |