Detail information of GWHGAAEX017762/evm.TU.scaffold_87.20


Functional Annotation

DatabaseOrthologsE valueAnnotation
COGgi|357416861|ref|YP_004929881.1|8.00E-06rhomboid family protein [Pseudoxanthomonas spadix BD-a59]
KOGKOG28904.00E-117Predicted membrane protein
nrgi|672123858|ref|XP_008785299.1|4.35E-151PREDICTED: transmembrane protein 115-like isoform X1 [Phoenix dactylifera]
trEMBLtr|A0A067DZN0|A0A067DZN0_CITSI2.00E-144Uncharacterized protein {ECO:0000313|EMBL:KDO48434.1}
TAIRAT3G079504.00E-117rhomboid protein-related

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX00000088939099980903-
Transcript Sequence

Network for GWHGAAEX017762

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF08551.9DUF17511482469.80E-30
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0006890Biological Processretrograde vesicle-mediated transport, Golgi to ER
GO:0016021Cellular Componentintegral component of membrane

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms112.760
SRR2545915Juvenile tuber84.660
SRP108465SRR5643513five period of Gastrodia elata45.890
SRR5643514five period of Gastrodia elata56.150
SRR5643515five period of Gastrodia elata44.340
SRR5643524five period of Gastrodia elata51.210
SRR5643525five period of Gastrodia elata44.490
SRR5643528five period of Gastrodia elata39.300
SRR5643658five period of Gastrodia elata44.140
SRR5643659five period of Gastrodia elata52.460
SRR5643660five period of Gastrodia elata52.930
SRR5643661five period of Gastrodia elata53.450
SRR5643662five period of Gastrodia elata78.320
SRR5643663five period of Gastrodia elata73.710
SRR5643664five period of Gastrodia elata79.430
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_183.330
SRR6049655Rhizomagastrodiae_C368-T10_good_177.150
SRR6049656Rhizomagastrodiae_C368-T07_good_180.460
SRR6049657Rhizomagastrodiae_C368-T07_good_197.510
SRR6049658Rhizomagastrodiae_C368-T04_good_182.810
SRR6049659Rhizomagastrodiae_C368-T04_good_180.110
SRR6049660Rhizomagastrodiae_C368-T01_good_187.320
SRR6049661Rhizomagastrodiae_C368-T04_good_188.570
SRR6049662Rhizomagastrodiae_C368-T01_good_172.780
SRR6049663Rhizomagastrodiae_C368-T01_good_173.520
SRR6049664Rhizomagastrodiae_C368-T10_good_173.420
SRR6049665Rhizomagastrodiae_C368-T10_good_173.420
SRP279888GastroGastrodia elata tuber 55.48
JuvenJuvenile tuber51.84
Mother_GastroMother tuber of Gastrodia elata 44.34
Mother_JuvenMother tuber of Juvenile 33.59