Detail information of GWHGAAEX017764/evm.TU.scaffold_87.23
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|254294472|ref|YP_003060495.1| | 5.00E-13 | glycoside hydrolase family protein [Hirschia baltica ATCC 49814] |
| nr | gi|672160591|ref|XP_008800080.1| | 4.04E-153 | PREDICTED: probable xyloglucan endotransglucosylase/hydrolase protein 30 [Phoenix dactylifera] |
| Swissprot | tr|Q38908|XTH30_ARATH | 2.00E-127 | Probable xyloglucan endotransglucosylase/hydrolase protein 30 (Precursor) |
| trEMBL | tr|M0U799|M0U799_MUSAM | 3.00E-149 | Xyloglucan endotransglucosylase/hydrolase {ECO:0000256|RuleBase:RU361120} |
| TAIR | AT1G32170 | 7.00E-127 | xyloglucan endotransglucosylase/hydrolase 30 |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000088 | 1020291 | 1022864 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX017764
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module4 |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF00722.20 | Glyco_hydro_16 | 34 | 214 | 3.70E-52 |
| PF06955.11 | XET_C | 248 | 287 | 4.70E-10 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| Carbohydrate-Active enzymes Family | GH16 |
| Carbohydrate-Active enzymes Family | GH16 |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0006073 | Biological Process | cellular glucan metabolic process |
| GO:0010411 | Biological Process | xyloglucan metabolic process |
| GO:0005975 | Biological Process | carbohydrate metabolic process |
| GO:0042546 | Biological Process | cell wall biogenesis |
| GO:0016762 | Molecular Function | xyloglucan:xyloglucosyl transferase activity |
| GO:0004553 | Molecular Function | hydrolase activity, hydrolyzing O-glycosyl compounds |
| GO:0048046 | Cellular Component | apoplast |
| GO:0005618 | Cellular Component | cell wall |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 64.770 |
| SRR2545915 | Juvenile tuber | 27.830 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 47.990 |
| SRR5643514 | five period of Gastrodia elata | 45.180 | |
| SRR5643515 | five period of Gastrodia elata | 81.740 | |
| SRR5643524 | five period of Gastrodia elata | 42.920 | |
| SRR5643525 | five period of Gastrodia elata | 211.510 | |
| SRR5643528 | five period of Gastrodia elata | 135.150 | |
| SRR5643658 | five period of Gastrodia elata | 150.930 | |
| SRR5643659 | five period of Gastrodia elata | 25.720 | |
| SRR5643660 | five period of Gastrodia elata | 27.570 | |
| SRR5643661 | five period of Gastrodia elata | 32.160 | |
| SRR5643662 | five period of Gastrodia elata | 106.350 | |
| SRR5643663 | five period of Gastrodia elata | 37.690 | |
| SRR5643664 | five period of Gastrodia elata | 273.560 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 170.010 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 98.680 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 111.720 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 143.680 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 180.930 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 229.300 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 256.930 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 181.330 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 117.690 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 233.710 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 152.430 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 152.430 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 126.06 |
| Juven | Juvenile tuber | 13.17 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 478.88 | |
| Mother_Juven | Mother tuber of Juvenile | 142.41 |