Gene detail

Detail information of GWHGAAEX017765/evm.TU.scaffold_87.27

Functional Annotation

Database	Orthologs	Annotation
nr	gi\|743779020\|ref\|XP_010919976.1\|	PREDICTED: homeobox-leucine zipper protein ROC3-like [Elaeis guineensis]
Swissprot	tr\|Q336P2\|ROC3_ORYSJ	Homeobox-leucine zipper protein ROC3
trEMBL	tr\|M0SQ64\|M0SQ64_MUSAM	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_Achr4P19010_001}
TAIR	AT5G46880	homeobox-7

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000088	1128676	1139396	-

Transcript Sequence
>GWHTAAEX017765 CTGAAAAGGGAGTCGGCGTTCTGCGCCCCCGCATCGTTACCTTCTCTTCTGCTGGAAAGCAGCCGGGTGTATTTACTCTTCCCCTTTATTGCTGCTCGCCTTCTCCTCTGATCTCACCTTCTTTTTTTATTTCCTTCCTTCGCCAGAAAATCCAAAATGCATGGAGATTGTCAAGTCCTGCCGTCGATGCTCGGATTCATGCCTCTAGCTGTGCCTAAAGAGGAAGCATCTCGAAAAGAAGAGGAGATGGAGAGCGGCTCTGGAAGCGGCAATCTTGATGGGTTTAGCTACGAAGAAGAAATTGACGCAGAGACGCTGGCATTGCCGCCTCCGACGGAGCAGGATAAGAAGAAACGCTACCATCGGCACACTTCCAGGCAGATCCAAGAGATGGAAGCGTTGTTTAAGGAATGCCCGCACCCGGACGACAAGCAACGGCTGAGATTGAGCCAAGAGCTCGGGCTGAAACCTCGGCAGGTCAAATTCTGGTTCCAAAATCGGCGCACTCAGATGAAGGCGCAGCAGGACAGGGCGGAGAACGGCATGCTGCGGGCGGAGAACGATAGGCTGAAGAACGAGAACTACAGGCTGCAGGCGGCTATGCATAACGTTATATGCCCAAACTGCGGCGGTCCAGCCATGCTTGGCGATATCTCTTTCGAGGAGCACCACCTCCGCATTGAAAACGCTCGCCTGAAGGAAGAGCTGGATAGATTGTCCTGCATTGCGGGAAGGTTTAGCAGCGTCCGGCCCATGCTGCCTTCGCCTCATTTGCTTCTGCCGCCATCGTTGGACCTTGACATGGGGGCATATTCGAGGCAATTTCACGAGCCTCTGCCGCAGCCCATAGAAGCATGTGACGAAATGTTTACATCTTTTGACGGCGTGCTTATAATGGAGGGGAAGAAGCCGCTGGCTCTTGAACTTGCCATGGCGGCCACCGATCAAATGACGAGAATGTGCAGGGAGGATAAGCCGCTCTGGCGGCCAAAAGGAGATGGCTGCCCGTCAGCCGAGGTGCTTGATGAGGGAGAGCTTAATAGACTATTTCCATGGCCTATGGATGTCAAGCAGATGGCTGGTGGGAGCTTCAGAATGGAGGGGACCAGAGACTCTGGCCTTGTTATAATGAATAGCATAACTTTGGTGGATGCATTCATGGATGCTAATAAATGGATTGAATTGTTCCCCTCCATTGTGTCCAAAGCAAAAACAATTCAGATAATAACATCTGGACTCTCTGGTAATGGAAACGGCTCCCTTCACTTGATGTATGCAGAGATTCAAGTTCTTTCACCTCTTGTGCCTACACGTGAGGCTTATTTTCTTCGTTATTGCCAGCAAAATGTGGAAGAAGGAACATGGACAATTGTTGATTTCCCGGCGGGCAGCCTTCAGGATAGTATTCAAATGCCCTTAACGCGATATAGGAGGACTTCGGGCTGCGTTATCCAAGACATGCCCAATGGGTACTCAAAGGTAATTTGGGTGGAGCAAGCAGAGGTAGAGGATAAGCCAATGCACCATATATTTTCCCAGTTCATTAGCAGCGGAGTGGGATTCGGAGCAACAAATTGGTTATCGACCTTGCAGCGACAATGCGAACGCTTGGCTAGCTTAATGGCTAGAAATATTTCTGATTTGGGAGTAATCCCTACTCCTGAGGCAAGGAAGAACATAATGAAGCTATCTCAAAGAATGGTGAAGACTTTCTGCTCAAGTATAACTTCCTCTGGTGGGCAATCATGGACTGCGGTCTCTGAATCACCTGATGACACAATTAGGGTAACCACAAGAAAAAATACTCTTCCTGGACAGCCTAATGGTATAATTTTGTCTGCTGTATCCACAGCATGGCTTCCATTCTCTTATCATCAAGTCTTTGATCTCTTGACCGACGAACAACGAAGGTCTCAGCTTGATGCTCTGTCAAATGGAAACTCTCTGCATGAAGTTGCTCATATTGCAAATGGTTCACATCCCAGGAACTGCGTTTCTCTTCTTCGAGTAAATGGCTCAAGCAATTCCTCACAGAATGTGGAGCTCCTTCTGCAGGAGAGTAGCACCCATTCCTCCGGCGGCAGCATGATCGTCTATGCCACGATCGGGGTGGATGCCGTTCAAATCGCGATGAGCGGCGATGATCCGTCATACATCCCACTTCTTCCGGCTGGCTTCGTCCTCTTCCCCGCAGAGCCGCCGCCGGCCTCCGGTGCTGCCGTCGGCAGCCTCCTCATTGTCGGGATGCAGGTGCTGGCGAGTGCCATCCCGTCCGCCAAACTCAATCTCTCCAGCGTCGCCTCCGTCAGCCACCACCTTCGCTCCTCCATCCACCAGATCAGCGCTGCGTTATCCGCCCCGCCAAGCCTGGATCATCAGTAGCAAGTACCCGTTCAAAATGGCCAAATTCCAACGGGCTAAAATCACTTGGGTAACCTCAAACCTGTTTAAAGTTGCGTATTGGGGAGGGGGGGGTATTAGAAGGCATCTAATTTGTTACTTAGTTAAAATTAGGCTGATGTAACTTTTAGTCAATAGTACAGTATTAGGGGGGGCAACGTGAGGGGAGTCAAGAGCGCACCAGCTGCAGTCCTTGAGAGTATTTAAAGAGGCTTCTCGAGGGGTTGAATTGGTTCGGGTATTGACTTCTGCTTCTGCTCCTTGTCTGGATTATTTTTCCAAGTAATGATAGCTAATTTGTCCTTCATCTTCTTCTTTATTCAGCTCTCTGCTTTTTTCTTCCTCTGGAAAAATAATAACTACTGCCCCTTGCTTCGGGTTGGTTCATATTTGGCAAGACTTAAATGGTGCTTTGGATTATCGATTGTCATTCTGTAATTAGGAGATAGCAACCACTTTTTGAATGAGGTGCAGAGCTGTAGTATATACCTCAAATAGTTGCTTTAAAGTGCTAG

Network for GWHGAAEX017765

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00046.28	Homeobox	65	120	6.20E-18
PF01852.18	START	313	484	1.70E-33

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	HB-HD-ZIP

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding
GO:0008289	Molecular Function	lipid binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	2.650
SRP064423	SRR2545915	Juvenile tuber	1.890
SRP108465	SRR5643513	five period of Gastrodia elata	3.720
	SRR5643514	five period of Gastrodia elata	3.370
	SRR5643515	five period of Gastrodia elata	2.790
	SRR5643524	five period of Gastrodia elata	3.270
	SRR5643525	five period of Gastrodia elata	3.490
	SRR5643528	five period of Gastrodia elata	3.410
	SRR5643658	five period of Gastrodia elata	3.270
	SRR5643659	five period of Gastrodia elata	2.520
	SRR5643660	five period of Gastrodia elata	2.360
	SRR5643661	five period of Gastrodia elata	2.220
	SRR5643662	five period of Gastrodia elata	1.940
	SRR5643663	five period of Gastrodia elata	2.590
	SRR5643664	five period of Gastrodia elata	1.680
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	2.230
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	4.600
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	3.060
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	3.280
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	2.740
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	2.770
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	2.820
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	4.050
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	4.640
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	3.440
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	3.900
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	3.900
SRP279888	Gastro	Gastrodia elata tuber	1.87
	Juven	Juvenile tuber	4.51
	Mother_Gastro	Mother tuber of Gastrodia elata	3.55
	Mother_Juven	Mother tuber of Juvenile	4.61