Detail information of GWHGAAEX017769/evm.TU.scaffold_87.33
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| KOG | KOG0627 | 6.00E-115 | Heat shock transcription factor |
| nr | gi|401761497|gb|AFQ02690.1| | 0 | heat stress transcription factor A-1 like protein, partial [Oncidium hybrid cultivar] |
| Swissprot | tr|Q84T61|HSFA1_ORYSJ | 2.00E-143 | Heat stress transcription factor A-1 |
| trEMBL | tr|M4H8G4|M4H8G4_ONCHC | 0 | Heat stress transcription factor A-1 like protein {ECO:0000313|EMBL:AFQ02690.1} (Fragment) |
| TAIR | AT3G02990 | 6.00E-115 | heat shock transcription factor A1E |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000088 | 1354560 | 1384926 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX017769
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF00447.16 | HSF_DNA-bind | 24 | 113 | 6.40E-29 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | HSF |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0043565 | Molecular Function | sequence-specific DNA binding |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0005634 | Cellular Component | nucleus |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 55.390 |
| SRR2545915 | Juvenile tuber | 79.240 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 42.660 |
| SRR5643514 | five period of Gastrodia elata | 32.890 | |
| SRR5643515 | five period of Gastrodia elata | 32.700 | |
| SRR5643524 | five period of Gastrodia elata | 32.810 | |
| SRR5643525 | five period of Gastrodia elata | 32.170 | |
| SRR5643528 | five period of Gastrodia elata | 29.470 | |
| SRR5643658 | five period of Gastrodia elata | 25.160 | |
| SRR5643659 | five period of Gastrodia elata | 74.090 | |
| SRR5643660 | five period of Gastrodia elata | 89.450 | |
| SRR5643661 | five period of Gastrodia elata | 80.300 | |
| SRR5643662 | five period of Gastrodia elata | 88.270 | |
| SRR5643663 | five period of Gastrodia elata | 86.630 | |
| SRR5643664 | five period of Gastrodia elata | 108.600 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 73.330 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 63.370 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 56.810 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 72.640 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 59.050 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 71.910 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 65.340 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 68.190 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 44.990 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 48.540 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 41.450 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 41.450 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 82.87 |
| Juven | Juvenile tuber | 85.60 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 30.20 | |
| Mother_Juven | Mother tuber of Juvenile | 52.61 |