Gene detail

Detail information of GWHGAAEX017772/evm.TU.scaffold_87.38

Functional Annotation

Database	Orthologs	E value	Annotation
COG	gi\|334146731\|ref\|YP_004509659.1\|	3.00E-14	hypothetical protein PGTDC60_0936 [Porphyromonas gingivalis TDC60]
nr	gi\|695021478\|ref\|XP_009397827.1\|	5.38E-52	PREDICTED: uncharacterized protein LOC103982584 [Musa acuminata subsp. malaccensis]
trEMBL	tr\|M0SSJ4\|M0SSJ4_MUSAM	2.00E-52	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_Achr4P27320_001}
TAIR	AT4G17940	7.00E-39	Tetratricopeptide repeat (TPR)-like superfamily protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000088	1565197	1569668	-

Transcript Sequence
>GWHTAAEX017772 TCGAACAATTTTCGAGTTTTTGTGTTAAATTGAATTGAAAACCCTAATTGGGTACAAGATAGATGAGGCATATGATGAGAGGGAGTTTAAAAACGAGTGAGAAGGGCGAGACCCAGTTTAAGCCGAAGACCCTGCGGTGCACTGAACCAGGCACGTAAGACGTAAGCGCTTCGTCCTTCGCCTGCTTCACGTTCTCCAGCGTATCCTCACGTGAGCATGTCTACACGCGTCAAAAGCCCTTTTGCCGCCCTTAACACCGTCATTTTCCTCGAAATTAAACGCCGTTAAACAAATCATATAGATGCCCCCTATAAATAAATCGACCCGAACGAAAACGAGCAGGGAAGGAAGAAACACGAGGAAGAACGAACCAGAGTACAGATCTTCTACCCTCCGCTCTCCTCTCTTCTCAAACCCTAAACACCATGAGAACAGCGCTTCTAATCCGAACGAGCAGCATCTCTGCCGGGACGGACATCTCCGCCGCTTCTCCCCAGCAATCTCCTCGCTTCCACGAAGCCAGCGGATCATTTTCTTCCCTGAGACAAAGGAGGACTCTGTCTTTGCCTGCAGGGAAGCCAAAACTCACGCGTTTGATCCGATATGAAGCCGATCTAAACAGATCGGCTCCCCAGAGCTCGTGCCGTTCAAGATGGTCGCCACCAACCGTCCTCACCGGCATGGAGGAACACGATCTGGCCGCCGGAAAATGGAAGGGGGTTTCATCCGCTGCCGTTGTGAAAGAGAACGCTGAAGTCGAGCATTCCGGCGGATCTGGAAAAGGCAAAGGAATCGGGAGCGCCGGCGGAAACTTTGGAGACAATGGAAACGAAAAGAACAATGGAAATCGAATGATCGAAAATTACTACCAGGAGATGCTGAGGGCGGATCCTCGTAATCCTCTCCTCTTGAGGAATTACGGAAGATTCTTGCACGAGGTTGAAAGGGATTTAAAGAAGGCCGAAGAATACTTCGAGCGGGCGATCCTTGCTTGCCCAGGAGACGGCGAGGTGCTGTCACTGTATGCGCGTTTGATCTGGGATTCTCAAAGGGACTCTGAGCGGGCGGAGTCGTACCATGAGCGTGCAGTGGAGGCTTCCCCTGATGATTGTTATGTAATGGGGGCATATGCGCATTTCCTTTGGGACGCGGAGGAGGATTCAGGGCCTTGATCCTGTCTCCCTTCTTGATCAGAAAACTGCCCTGATTATGAATGAAGATATATGCCCTAGGACGGGAAAATGAGAAGGAATCAATGGGGGATGAAAACAGTGGGGATGGGTCCGTCCAAAAAGAGATAAGATGGAGGGGAAGTGAAAGAAGATGCTTTATTAATTATGCTGCTGAGAATGGGCAATAGTAGACTTAATAATATAAATAATTAGAAGATTAATCTGAATGGGGGTGTTCGTGGTTTGACAGGAATGGCAGATTGTTTTTAAAAGTAATAAAACTGCTGTTGGAAGTGAGGGGTCTGCGATGACGAAGTCGCTCTGTCGTCTTTTCCTACTTTTTCTGATTTGTGTGAGGGCTTTGTAATTAATTAGAGGGCTGCGATTGAATCCACTCTTTTGAGGACTGTAAATGCTAGCATTTTCATTTTCGAGTAATTTATGGGTGCTTATGCAGTTATATAAAAATAGAAATCATTTAAATAAAGGTGGTGGAGGAGGGCTCGGTTGGATGGTCCAACATCAAAAGTGGGGCTATTGCTCAGCTTGTTGATCAAGGAAAAGAAGCTAAATTGATTAAATATGAGAGCCTACAGCATGTGTTATTCAAACAAATTTGACCACTAGCAAAGTTCGGATAAATGCACCTTCATTTCAGCTATATGTGCAAGTTGCTCCTTGGGATTCTTCTCCACCGTTAGATCCTAATATGACACTTGAGGCCAATAGTGTGCTACACTTTATGTCATACAGAACTTCATATGGGGTCATTCCAATACAAGACTGATAGTTGTTGTTGTACGTGAACTCAACTACCGTCGAAGTCTAATATGCTTAATCGAAGATTTTCAAGTACTTGATTTACTCTCTCGGACCATGTGTTTGAGGGTAAAAGACTGTACTCATGGCCAATACTATCCTCAAATTTTGATGTACTACCTTCAAAAAATGGGAGGTAAATTTGACATCACGATCAGAGACAGTAATTTTAAGGATTCCATGAAGTTTGATTATTTTTTTAATATATAACTTGATTAGCTTTTCCACTGAATCTATTTGTTAATAGGCATGAAGTGTGCTGATTTCGTTAGACAATAAATAATTACCCAAATTGCATCTATTCTAGTACGGCTTCTGGTAAATCCTATCACAAAGTTTATGGAAATGTCTGATCATTTCCACTCTGAGGTATCTAATGGATGCAATAGTTTGCATGACCTTTGATGTTCTGCCTTTACTAAGCTGCAGACGTGACATTTAGCGATGTATTTAGTTGTCTTTCACTAGAAGGCTTCTTTCAAATCTTTATACATTTTATTATTTTCAAAGTGAATTGAGTACCATAAGTTGTGAGCTTCAGTTAAAATTTGATTCCAAATGTATGAATTATTTGTAATCCAAATCATATTCCCATGGTATATATAAATTCCTTTTTTCATATG

Network for GWHGAAEX017772

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
--	--	--	--	--

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0005515	Molecular Function	protein binding

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	186.010
SRP064423	SRR2545915	Juvenile tuber	133.500
SRP108465	SRR5643513	five period of Gastrodia elata	119.820
	SRR5643514	five period of Gastrodia elata	76.360
	SRR5643515	five period of Gastrodia elata	141.350
	SRR5643524	five period of Gastrodia elata	59.620
	SRR5643525	five period of Gastrodia elata	170.850
	SRR5643528	five period of Gastrodia elata	111.800
	SRR5643658	five period of Gastrodia elata	128.950
	SRR5643659	five period of Gastrodia elata	259.290
	SRR5643660	five period of Gastrodia elata	198.620
	SRR5643661	five period of Gastrodia elata	252.440
	SRR5643662	five period of Gastrodia elata	293.210
	SRR5643663	five period of Gastrodia elata	198.630
	SRR5643664	five period of Gastrodia elata	445.440
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	225.340
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	133.600
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	186.970
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	224.740
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	170.720
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	191.620
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	235.780
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	185.190
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	113.120
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	196.970
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	131.890
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	131.890
SRP279888	Gastro	Gastrodia elata tuber	196.42
	Juven	Juvenile tuber	143.31
	Mother_Gastro	Mother tuber of Gastrodia elata	186.20
	Mother_Juven	Mother tuber of Juvenile	216.33