Gene detail

Detail information of GWHGAAEX017780/evm.TU.scaffold_87.48

Functional Annotation

Database	Orthologs	E value	Annotation
COG	gi\|257388158\|ref\|YP_003177931.1\|	1.00E-64	DNA replication factor Dna2 [Halomicrobium mukohataei DSM 12286]
KOG	KOG1805	0	DNA replication helicase
nr	gi\|743829333\|ref\|XP_010934118.1\|	0	PREDICTED: DNA replication ATP-dependent helicase/nuclease DNA2 [Elaeis guineensis]
trEMBL	tr\|M0SXY4\|M0SXY4_MUSAM	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_Achr5P12550_001}
TAIR	AT1G08840	0	DNA replication helicase, putative

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000088	2091151	2154024	-

Transcript Sequence
>GWHTAAEX017780 ATGTTCAACGATGATGTCAAACAACTGTCAGAACCTCAAGTTGGTAGGCTTGCCTGCTCCCTCAGATGCGGGGACATTGTGATAATCAGCATGGTAAATGGACGTCCAGCAGTTACAAATGGAATTATATGTGGCATTGATCAATATCGTGTCTCTGTATCTCTTACTCGGAAATTGAGGATTCCTGGAAGCCTTTGTTTTTCAGAAACTGCTGACCTCATTCACGTAGTTTGGAGGATTGACAAAGATGAGATTGCCACCTCATATGCTATGATGAGATTCAACCTAGTGGAGTTATTTTCTTCAACTTTACAGATATCTCATCTTAGAAAAATGGTTGTCGACCTTGAGGCACCTCGATTTGACAGTGGTGGATTACTTTGTCAGGACCCAGCAGTCTCTTATGTACAGTTGGAGAGGTGTATAAATGATGATCAGCGTAGAGCTATCAAGAAAATTCTTTCTGCAAAAGATTACACTCTTATATTGGGAATGCCTGGAACTGGGAAAACATCAACAATGGTGCATGCTGTTAAGGCTTTGCTGATGAGAGGGTCATCCATTTTACTGACATCATACACCAACTCGGCTGTTGATAATTTGCTTATCAAGCTAAAAGCTCAGGGCGTTGATTTTGTTCGCCTTGGTAGGAAAGAAGCTGTTCATGAAGACATCCGTCACCATTGCTTTATAGATATGCAATCTGTTGATGATGTTAAGCAAAGGATGGAACAAATTCGTGTTGTTGGAGTAACATGTTTGGGCATAAAGCATCCCTTGCTTGTGAACAAAAAGTTTGATATCTGCATAATGGATGAAGCTGGACAAATAACTCTGCCAGTTTCTTTAGGGCCATTGATGCTGTCTACTACATTTGTTCTCGTTGGAGATCATTATCAGCTACCACCACTTGTTCAGAGTACAGAAGCTCGTGAGAATGGAATGGCTGTAAGTCTATTCTGCAGGCTTTCTGAAGCTCATCCTCAGGCTATATCAGCTTTGCAGAGTCAGTATCGGATGTGTTCTGGCATCATGGAATTATCAAATGCCCTTATTTACGGAAACAGGTTGCGTTGTGGTTCCCAGGAAGTAGCAGATGCAAAAATCAAACTATCCATTGTAGAATCAATAAAATGGTGGTTGAAACAGGTTTTAGATCCAAACAAGTCTGTTATCTTTGTCAACACAGACAAACTGCCTGCACCTGAGGCAAGGGAGAAATACAATGTACATAATCCTCTGGAAATTCGCATCATATCGGAGATAGTATGTGAGTTAATTGAAAGAGGTGTTCCAGAGAATGAAGTTGGCATCATAACTCCTTACAATTTTCAGGCCAGCCTCTTTCAACGTGCTATCAACGCTTGTGTAGAGATACATACCATTGATAAGTATCAGGGAAGGGACAAGGACTGCTTATTAGTTTCGTTTGTAAGATCTTGTGAGGCCTCCAAGGCTTGTACATCTTCCTCCTTGCTGGGAGATTGGCACAGAATCAATGTTGCTCTCACCCGTGCAAAGAAGAAGCTGATAATGGTGGGCTCGTGTGGGACTCTTTCCAACATACCTCTGCTGAAGCTTCTCATAGATAAGGAGTCTCTAAATGGTTCGGGTAGAGACGAGGCCTGGAAAATCAGATGAGATCTTCATAGTGAACTCGGTGGGCTCAATTGGAGGTTTGAGATCCTTCTCAAGGTTCAAACGGAGGTTAGGAATGCTGTGTTTATGAGGATTAGTGGAGAGCTATCAAGTTGTTAAATTTTGAAGTTATGGATGCATTCCCAGGATCGAATCTATATATATATTTGTTTATTTCAAGTTATATTTTTGACAAAATAATCTTCAAAAATTGTCAGAATTTGCAAAACATATTTTTTTTTTACTCCTAACGTGTGGGGGAATAGTGTTTAGGCCTCGGATTTCTCCCATGTGAATAGAGAGGGATGTGTTTTTGTTGTTGAGGTGGGCACTGTAACAGCATCTATTTATTTATTCTTCAAAAATAAAATATTTGTTGAGCCTTATATCGTAGCTTAAGATGCATAGAAAATGCTAGAGTTGATTTGGAATGATGCTAATTGTTGGAAAATGATCTCTATTTATATTAGATAGAGTAGGTTTAGCCAGTGTCAATATTTTTTAGCACAAACACATCTGAGCGAGTCAATATGCATTTGGGTGCATTGCGGTGGTTCATGGCTAAACTTATGCATTATCAAAGCTTGCTTAAACATGTGTTAAAACATGGTTGGGCATATTTAAATGGTAGGTTTGGACGCAACTGAGCCTTCCCATAGATCGGGTTGTAATAAGTAAGACGTGTTTAGCGCACGCCTCGG

Network for GWHGAAEX017780

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF13086.5	AAA_11	142	235	4.90E-16
PF13086.5	AAA_11	240	307	3.20E-14
PF13087.5	AAA_12	316	516	2.30E-47

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K10742	DNA2	DNA replication	map03030

Gene Ontology

GO term	Ontology	Name

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	12.980
SRP064423	SRR2545915	Juvenile tuber	17.440
SRP108465	SRR5643513	five period of Gastrodia elata	12.870
	SRR5643514	five period of Gastrodia elata	12.850
	SRR5643515	five period of Gastrodia elata	12.090
	SRR5643524	five period of Gastrodia elata	11.270
	SRR5643525	five period of Gastrodia elata	6.000
	SRR5643528	five period of Gastrodia elata	5.940
	SRR5643658	five period of Gastrodia elata	8.510
	SRR5643659	five period of Gastrodia elata	11.570
	SRR5643660	five period of Gastrodia elata	11.720
	SRR5643661	five period of Gastrodia elata	9.160
	SRR5643662	five period of Gastrodia elata	11.490
	SRR5643663	five period of Gastrodia elata	15.390
	SRR5643664	five period of Gastrodia elata	9.900
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	12.040
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	6.530
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	12.650
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	13.690
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	12.510
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	12.280
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	13.880
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	13.040
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	11.410
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	9.630
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	10.080
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	10.080
SRP279888	Gastro	Gastrodia elata tuber	12.87
	Juven	Juvenile tuber	13.13
	Mother_Gastro	Mother tuber of Gastrodia elata	8.28
	Mother_Juven	Mother tuber of Juvenile	11.38