Gene detail

Detail information of GWHGAAEX017793/evm.TU.scaffold_87.68

Functional Annotation

Database	Orthologs	E value	Annotation
COG	gi\|284044814\|ref\|YP_003395154.1\|	3.00E-07	ubiquitin [Conexibacter woesei DSM 14684]
KOG	KOG4248	2.00E-88	Ubiquitin-like protein, regulator of apoptosis
nr	gi\|672109006\|ref\|XP_008788021.1\|	0	PREDICTED: large proline-rich protein bag6-B isoform X2 [Phoenix dactylifera]
Swissprot	tr\|P62981\|RS27A_SOLTU	5.00E-10	40S ribosomal protein S27a (Precursor)
trEMBL	tr\|M0SZS8\|M0SZS8_MUSAM	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_Achr5P18990_001}
TAIR	AT5G42220	2.00E-88	Ubiquitin-like superfamily protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000088	2979915	3044007	+

Transcript Sequence
>GWHTAAEX017793 ATTGTAGCAAAATTTTAAGAAAAATTTCATGTGTAAAAATAAAATATAAGAAAAAAAATTCCATTACTAATGCTGAATATTTTTTCTTGATTATTTTATTAAAAATTTAGCATTTTATTTAAAAAAATTCCACCTAAGATTTTGATATATTAAAATTTTAAATTCTAAGCACTGAATCATCACCATTTGACAATGCTCTTTGTAATACCGTGAAGTTGTGCTCTTCTCGGACGCCTGCTTAAAAAATTTCGCCTTAAAAGACCCTCCGCCTCAAAGGCCCATCGCTTCGCCTTCGAGCAGAAGAAATCCTTCGCTACGCCTTCCGCAGATTCGCAGACGCCTTTGCCGTCGCCTCCTTAATCGTCCATTCACCGCCCGAGTTACGAAGGATGACGTCTGAATCCATCTCAAAGGGCACCAGCTCAATCCAGACTGATTCTGAGAGTGCTGAATCAACCATTGGAATCAACATTAAAACTCTGGATTCACAGACATTTTCCCTCCGTGTGAACAGAAATATAACAGTACCTGCTTTAAAAGAAAAGATTGTGACTGCTGTTGGGGTTCCCCTAGAACAACAACGATTAATTTATAGAGGAAAAGTTCTCAAGGATGAGCAATTGTTATCAGAATTTCATGTGGAAGATGGAGACACTTTACATTTGGTTGTAAGGCAGCCGATTCAGTCTCAACCTGCATCTTCGACAGGTGCTACTGATGCTTCAAGAACTCGTGGCAACCAAGCCAATGGTTCAGGTACTGGAGTACAAAACAATAGGGGGCAGGTTGCTCACGGTGTTTTGCTTGGAACAGTAAATGTTTCAGATAGACATGGTGAAGCTATGCTAGCTGACCTCAGCAGGAGTATCGAGACATTTCTCGGTTCTTTAGGATTAGTTACAGTAGAACCCGCTGGGGGACCTGGCCATGCTCCATCAGTTTCTGCAACATCGTCTGGTGCTGGAGCAGAAAGATCTCAAAATACTAGCAGAACTGAGTCAAGTTATTCAGCACCTGAGGGTTTTACGCTGCCTAGTAATAATCCGCTGCTGGTATCAACTCAGTTGCCGTTTGTGCGAACTTTAAATCAACAAGTGGTTATCTCTGATGCTCTGACAACTCTTTCTGAGTTCATTGATCGTATAGAGTTAGTGTTGCAAAGTCATAGTAGCTCACCTAACAGTTCTCAGCAACATCCACAAGCCCCTTCTTTAGATGAAAGAGGATTGCCAACCCCTGATTTCTTATGTTTTGTCTTGGAAAGAGTACAACAACTACTAAGAGATTGCGCAGCATCTGCTCTTTTGCACATATCCACACGCTTACGAAGGGAAGGCAGCTCTTCTGATCAAGTGGTGCGAGGTCAGATCCAGGCTGAAGCTATGCAATTAGGCGTTGCAATGCAGCATTTGGGTACTATGCTTTTAGAGCTCGGTCGCACAGTTATGACACTCCGCATGGGGCAATCTCCGACAGAGTCTTCTGTGAATGCTGGTCCTGCAATTTATATATCTTCAACGGGGCCAAATCCGATAATGGTTCTGCCAAACTCCCTATTTGGTATGGCTTCTGCTCCATTATTCTCTGGATTATCAGCTGGAACATCTCCTGGAAATCCTTTAAGCAACATTAATATCCATCTACATGCTGGGAGTTCCGCAGTCCCTGGGGTTTCCTCAACTGTTGGCATGATGAATTCCAGTGAAGCTGCTCTTGATGAACGTCAGAGCACTGAGCAATTAAGTACAAATAGAAACGGGTCAAGTGATTCTAGTTCTACAAGAGGATTGCCTTTGAGAACGGTAGTTACTGCTACCCCAACACGGACTGTTCCAGAAGCCACTGGTCATGTGTTCAGTGTCACATACCCTGTTCACATAAGAGCACAACATTCCATCCCTGTACATTATGCTTCTCCTCAAGTTTCTGGCTCTACTCTGAATCTAATGGGACAATCTCGTGAGCAAACTTTGGCCCCATCACCATCTATTTCAGTCCCTGCAATTGTGGCTCAGGTCACAGCTCGCATCACCAATGCATTAACCGGAAATGCACTGATACAGAGCTCATCCACTAGCTTGCAGTCTAATGCAACTCAAGACTCTCATTCAGTTGTGGGCAATGGTGAACAATCTAGCTTGTCAAATTCTACTGCACAGCCATTTCAAATGGATAATAGCATCATTCATACAGTGCAGTCGAATATGCAAAACAGTTCAGTTTCTAGTGATTCTCAAATTCAAAATCTATTATCTGTGCCTCAAACCTCTCATGATTTAAGCAGGAGAGAAGATAATGTATCATCTTGTCCAGAAGATCTATTTTCAGGCGCTAGTGATGTAAATTGTGACTCAGTAAATGGCGCAGTTGCTGAAATTTTGAATCAAAGTGGTTCTTTGAGAGATTGCACTTCTGATTGCACTGTTCCTGTAAAAGAAAGGCAGCAGATAAAAGACAATAAGCTTAGTAATATTGAAGAATCATCAGCTCCAAGCTCATCCAAAATTCTAGCTTATCAATCTGCTTGTATGCCATCTAGTTCTTCAGATGGTGAATCTCATAAGAGAGATCCAGAATCTTCTGAGCTTCAGAAGCCACTCTCATCGAAGAATTCAATGGAGAGCAATATGCCAACTCCCTTGGGGCTAGGTATTGGAAGCTTACAGACGAAGAAGCGTAGTAAGCTAGTGAAGCATAAAGGGGAGGATGATGGCCAAGCTAAGGCTCCTTCAGATGAGAATCAGCATTCTAAGGCCCATGATGCTCTTCCTTCTCTTCCCTCCCAGTCTTTGAGTGCGTGTAGGGGAAACACAACTGGCTCTTCCAGTCAGCTTCCCTCTTTGATTTCTCAACTTGTGAGTAGCATGCCATCGGGGGGTCATGATAGCAGAACCCAAACAGACTTTTCAGGCTTGTTTACAAATGCCATACAAAGTACAGCTTTCAGCAATCTCTTGACAGGGGTAGCATCACAGTCTGGGGTTTCAACTAGTGATCTTCGATCTATGATGGAGCGATGTGTTCAGAGCCCTGCAGTTCAAAACACAGTTAATCAACTTGTACAACAAGTAGGGCAGAGCCAAGATACTGAAAGCATGCAGGGTACTGAACAAGGAAGATTGAGTTTTTCAGGGTTGATTCAACAAATGCTACCTGTTGTATCTCAGGCATTTGGCCAGGCATCGAAAGACCCTTCATCTATTCAGGACATGCAATCTGAGCATCAGCCTGAATCTGATGAAATGAATATTCTTGTCACGAAGTCATTGTATGACATTAACTATCAGGCTGATCTCAGGGAAGCTCTCGAAAAAATTGAGCAACTTGGTGACCCTAAAAGTATATTTGGAACAATGCTTGAGGTTGCGGGTCGCTTATATGGAGAAGAGAATAATTCTTTGTTTGAACTGGAAAATGATGAGGAACTGGCCAACGACTTCATTGAGGTGTTGAAACGTGATATTAAGCGTAGGCTGGATGAAGAAAACCCATCAGAGGACAAGCCTTGAATGAACTGTTCTTCACTCCCCAATGCACTGTGGCTGATCTCAGCTCCCCAATGAATTTCTGATATGAGAAATTATATTGTCCAATAGAAATTTACTGTTGTTTTCTTGTACATCTTAAATTTCATAGAAATTGATATTGCATTTCTACATGGACTTCTTACCGTTTGCCATATGCCCTTTTTTCAGCAGCTATGAAACATTTAGAACCAGTCGATCTGCTGTGAAACATTTGACCTTTCATAGCTTGATTAAGGAAATTTTGTATTTTTGGGTTTTTTTTCATTGTTTTTATTAATTTACTATCTCTTATATACATAAATGGTTACAACACAGATGAAAGTTTGCATTTAATTGTACTGGTTTTTTAACTAAGTAGTTGTTGAATTTGGGTGACATCAAATTTAAATGCACAAATTGAATAAATTGATACA

Network for GWHGAAEX017793

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00240.22	ubiquitin	26	96	4.90E-22

Protein Sequence

>GWHPAAEX017793
MTSESISKGTSSIQTDSESAESTIGINIKTLDSQTFSLRVNRNITVPALKEKIVTAVGVPLEQQRLIYRGKVLKDEQLLSEFHVEDGDTLHLVVRQPIQSQPASSTGATDASRTRGNQANGSGTGVQNNRGQVAHGVLLGTVNVSDRHGEAMLADLSRSIETFLGSLGLVTVEPAGGPGHAPSVSATSSGAGAERSQNTSRTESSYSAPEGFTLPSNNPLLVSTQLPFVRTLNQQVVISDALTTLSEFIDRIELVLQSHSSSPNSSQQHPQAPSLDERGLPTPDFLCFVLERVQQLLRDCAASALLHISTRLRREGSSSDQVVRGQIQAEAMQLGVAMQHLGTMLLELGRTVMTLRMGQSPTESSVNAGPAIYISSTGPNPIMVLPNSLFGMASAPLFSGLSAGTSPGNPLSNINIHLHAGSSAVPGVSSTVGMMNSSEAALDERQSTEQLSTNRNGSSDSSSTRGLPLRTVVTATPTRTVPEATGHVFSVTYPVHIRAQHSIPVHYASPQVSGSTLNLMGQSREQTLAPSPSISVPAIVAQVTARITNALTGNALIQSSSTSLQSNATQDSHSVVGNGEQSSLSNSTAQPFQMDNSIIHTVQSNMQNSSVSSDSQIQNLLSVPQTSHDLSRREDNVSSCPEDLFSGASDVNCDSVNGAVAEILNQSGSLRDCTSDCTVPVKERQQIKDNKLSNIEESSAPSSSKILAYQSACMPSSSSDGESHKRDPESSELQKPLSSKNSMESNMPTPLGLGIGSLQTKKRSKLVKHKGEDDGQAKAPSDENQHSKAHDALPSLPSQSLSACRGNTTGSSSQLPSLISQLVSSMPSGGHDSRTQTDFSGLFTNAIQSTAFSNLLTGVASQSGVSTSDLRSMMERCVQSPAVQNTVNQLVQQVGQSQDTESMQGTEQGRLSFSGLIQQMLPVVSQAFGQASKDPSSIQDMQSEHQPESDEMNILVTKSLYDINYQADLREALEKIEQLGDPKSIFGTMLEVAGRLYGEENNSLFELENDEELANDFIEVLKRDIKRRLDEENPSEDKP

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0005515	Molecular Function	protein binding

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	68.320
SRP064423	SRR2545915	Juvenile tuber	54.490
SRP108465	SRR5643513	five period of Gastrodia elata	39.290
	SRR5643514	five period of Gastrodia elata	38.460
	SRR5643515	five period of Gastrodia elata	40.160
	SRR5643524	five period of Gastrodia elata	39.460
	SRR5643525	five period of Gastrodia elata	36.720
	SRR5643528	five period of Gastrodia elata	41.380
	SRR5643658	five period of Gastrodia elata	44.060
	SRR5643659	five period of Gastrodia elata	40.540
	SRR5643660	five period of Gastrodia elata	42.500
	SRR5643661	five period of Gastrodia elata	39.610
	SRR5643662	five period of Gastrodia elata	39.840
	SRR5643663	five period of Gastrodia elata	43.240
	SRR5643664	five period of Gastrodia elata	45.670
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	39.870
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	42.490
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	41.130
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	41.520
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	51.030
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	55.330
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	46.650
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	47.680
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	38.310
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	41.480
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	41.340
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	41.340
SRP279888	Gastro	Gastrodia elata tuber	44.28
	Juven	Juvenile tuber	54.89
	Mother_Gastro	Mother tuber of Gastrodia elata	63.68
	Mother_Juven	Mother tuber of Juvenile	86.71