Detail information of GWHGAAEX017799/evm.TU.scaffold_87.79_evm.TU.scaffold_87.82
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|530780142|ref|YP_008431947.1| | 2.00E-41 | hypothetical protein N186_02790 [Thermofilum sp. 1910b] |
| KOG | KOG2364 | 2.00E-97 | Predicted pseudouridylate synthase |
| nr | gi|694995881|ref|XP_009390915.1| | 0 | PREDICTED: putative tRNA pseudouridine synthase Pus10 [Musa acuminata subsp. malaccensis] |
| trEMBL | tr|I1J0K2|I1J0K2_BRADI | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:BRADI5G18300.1} |
| TAIR | AT1G20410 | 2.00E-97 | Pseudouridine synthase family protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000088 | 3500822 | 3570041 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX017799
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0009451 | Biological Process | RNA modification |
| GO:0001522 | Biological Process | pseudouridine synthesis |
| GO:0003723 | Molecular Function | RNA binding |
| GO:0009982 | Molecular Function | pseudouridine synthase activity |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 11.200 |
| SRR2545915 | Juvenile tuber | 19.360 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 14.490 |
| SRR5643514 | five period of Gastrodia elata | 16.120 | |
| SRR5643515 | five period of Gastrodia elata | 14.300 | |
| SRR5643524 | five period of Gastrodia elata | 14.500 | |
| SRR5643525 | five period of Gastrodia elata | 5.470 | |
| SRR5643528 | five period of Gastrodia elata | 5.620 | |
| SRR5643658 | five period of Gastrodia elata | 6.610 | |
| SRR5643659 | five period of Gastrodia elata | 14.390 | |
| SRR5643660 | five period of Gastrodia elata | 12.860 | |
| SRR5643661 | five period of Gastrodia elata | 11.340 | |
| SRR5643662 | five period of Gastrodia elata | 9.440 | |
| SRR5643663 | five period of Gastrodia elata | 13.350 | |
| SRR5643664 | five period of Gastrodia elata | 10.630 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 18.140 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 10.840 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 17.930 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 14.970 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 18.820 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 16.270 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 18.670 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 19.030 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 23.440 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 22.890 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 19.640 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 19.640 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 20.77 |
| Juven | Juvenile tuber | 24.75 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 24.10 | |
| Mother_Juven | Mother tuber of Juvenile | 19.84 |