Detail information of GWHGAAEX017800/evm.TU.scaffold_87.84


Functional Annotation

DatabaseOrthologsE valueAnnotation
COGgi|218778088|ref|YP_002429406.1|1.00E-07mechanosensitive ion channel protein MscS [Desulfatibacillum alkenivorans AK-01]
KOGKOG46291.00E-136Predicted mechanosensitive ion channel
nrgi|674909028|emb|CDY24094.1|1.16E-164BnaA06g00920D [Brassica napus]
Swissprottr|Q9SYM1|MSL6_ARATH5.00E-107Mechanosensitive ion channel protein 6
trEMBLtr|A0A078GFJ4|A0A078GFJ4_BRANA4.00E-165BnaA06g00920D protein {ECO:0000313|EMBL:CDY24094.1}
TAIRAT2G170101.00E-136Mechanosensitive ion channel family protein

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000008835756703578869+
Transcript Sequence

Network for GWHGAAEX017800

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation
Module2

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00924.17MS_channel4796491.70E-19
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0055085Biological Processtransmembrane transport
GO:0016020Cellular Componentmembrane

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms0.160
SRR2545915Juvenile tuber0.590
SRP108465SRR5643513five period of Gastrodia elata4.880
SRR5643514five period of Gastrodia elata9.370
SRR5643515five period of Gastrodia elata4.710
SRR5643524five period of Gastrodia elata6.380
SRR5643525five period of Gastrodia elata0.580
SRR5643528five period of Gastrodia elata0.410
SRR5643658five period of Gastrodia elata0.230
SRR5643659five period of Gastrodia elata0.830
SRR5643660five period of Gastrodia elata0.450
SRR5643661five period of Gastrodia elata0.760
SRR5643662five period of Gastrodia elata0.330
SRR5643663five period of Gastrodia elata0.230
SRR5643664five period of Gastrodia elata0.420
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_114.690
SRR6049655Rhizomagastrodiae_C368-T10_good_116.030
SRR6049656Rhizomagastrodiae_C368-T07_good_113.280
SRR6049657Rhizomagastrodiae_C368-T07_good_16.310
SRR6049658Rhizomagastrodiae_C368-T04_good_111.690
SRR6049659Rhizomagastrodiae_C368-T04_good_18.340
SRR6049660Rhizomagastrodiae_C368-T01_good_15.930
SRR6049661Rhizomagastrodiae_C368-T04_good_16.580
SRR6049662Rhizomagastrodiae_C368-T01_good_113.670
SRR6049663Rhizomagastrodiae_C368-T01_good_113.530
SRR6049664Rhizomagastrodiae_C368-T10_good_128.370
SRR6049665Rhizomagastrodiae_C368-T10_good_128.370
SRP279888GastroGastrodia elata tuber 0.44
JuvenJuvenile tuber1.17
Mother_GastroMother tuber of Gastrodia elata 0.90
Mother_JuvenMother tuber of Juvenile 2.41