Gene detail

Detail information of GWHGAAEX017801/evm.TU.scaffold_87.85

Functional Annotation

Database	Orthologs	E value	Annotation
COG	gi\|218778088\|ref\|YP_002429406.1\|	3.00E-07	mechanosensitive ion channel protein MscS [Desulfatibacillum alkenivorans AK-01]
KOG	KOG4629	0	Predicted mechanosensitive ion channel
nr	gi\|743775560\|ref\|XP_010918162.1\|	0	PREDICTED: mechanosensitive ion channel protein 6-like [Elaeis guineensis]
Swissprot	tr\|F4IME2\|MSL8_ARATH	0	Mechanosensitive ion channel protein 8
trEMBL	tr\|C5Y1C6\|C5Y1C6_SORBI	0	Putative uncharacterized protein Sb04g032300 {ECO:0000313\|EMBL:EES07479.1}
TAIR	AT1G78610	0	mechanosensitive channel of small conductance-like 6

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000088	3581604	3585077	+

Transcript Sequence
>GWHTAAEX017801 ATGAACGCTCTTCGTAAATCCTTCAACTCCCATTCCTCCTACAAGCGCCAGATCCCCTCGCGAGATCCTCCCGAGGATTCTTCCGATACGCAGGAGCTCATCGTCAAGGTCGATGGAGGGAGCGACGATCTTCAAATGCAGAGCGGGAACAACAAGGTTTGGCGAGAATCTAGCTATAATTTCTGGAAGGAAGGCCATCTTGACAATGGCGACGTATTGGAAGGAAATGGGTCGGGATTTACATTTCAGAGCCCTAAAAAGAAAGATATACCCGAGATCCTGGAAGATCCTCCCTCCCGTTTGATCTGCTCGTTTTTGCAGAAACAAAGGACCTCCGGATCGGAAATGACGCTGGATATGGATCTGGAGATGGAGGAGCTGAAGAAACCCCCGATTAGCTCTACCTTCGTCTCATCCAAGGAGCAGCGCGTCTCCTTCCACGACATTTCCAACAATCTCTCTTCTGGTAACTCGAATAAGGAATCAGATGACGACTCCGCCGTTGATACGACGGAGGTCCTTCGATGCACCTCCAGCTCCTCGATACGCCGTAGCAGGTCGATGCTGCGGGCCAAAACTAGGTCAAGGCTCATAGATCCTCCCGTCAACGAAAAGATGCCAAACAGATCTGGGCAAATGCCCCAGCGATCCAGCCAAATGTCAGAGAGATCCGGCATGGTCTGCAAGTCGTCCATCCTCGAAGAGGATGAGGACGACCCTTTCGAAGATCTTCCGGAGGAGTTCAAGAGAACGAGGATGAACAGATGGACGGTGCTCGAGCTGATCGGCCTTGTGCTTGTCCTGACTACCCTGGTCAGCAGCCTTGCCATTCGCAAGCTCGCGTGTCAGTCCGTCTGGGGGCTTCATCTCTGGAAATGGGAAGTGCTCGTCCTCGTCCTCATCTCAGGCCGCCTCCTCTCTGGATGGTTCATTCGCATCGTTGTCTTTTTCCTCGAGCGCAATTTTCTCCTCCGTAAGCGATTCCTTTACTTCGTCTACGGTGTCCGCAGTGCGGTTCAGAACTGCATATGGCTCGGCCTTGTCCTCCTCGCTTGGCACTTCCTCTTTGACAAGAGGGTGATTGGCGAAAACAAGACGCTGTCATACATCACCAAGCTTCTCTTCTGCCTCATCGTAGCCACCGTCTTGCGCCTCGTCAAAAACCTTCTTCTCAAGGTTCTAGCCTCGTCCTTTCACGTCAGTACATATTTCGATAGGATCCAGGAGGCATTGTTCAACCAGTATATTATCGAGACTCTCTCAGGCCCGCCTCTCCACGAGATTCAGCACAACATGGAGGAAGAGAAACGGATGATGGTCTTGATGCAAAAGCTGCAGAATACAGGATGTAACATACCCAGCGACCTCAAGGCAGCGGCTATGCCATCCAAAAATGGGAGGCTAATTAGAGAGAGCGGTGGAAATGCCGTCGGATTGAAGAGTGCCCAGATCGGAAAGAGCATGAAGTTTTCTGGGTCTGTTCTTATAAAAGACTGCAACAAGCAGCAAGCACAACAAGAGGGAGGGATTAGCATCGATCAATTGAACAAGCTCAACCAAAATAATATATCCGCTTGGAATATGAAGAGGATGATGAGGATTGTCAGGCACGGTACTCTAACGACTCTTCACGAACAAATAACTCATGGATTTGAGGAGGATGAGTCGAGTATGCGGATCATGAGCGAGCATGAGGCTAAGTTTGCAGCAAGGAAGATCTTTAGCAATGTTGCCAAGACCGGTGCCAAGTACATCCACTTAATTGATTTTATGAGATTCATGAGAGAAGACGAAGCAATAAAGACGATGAGCCTTCTAAATGAAGAGCGAGTTAGCAAAAGAGTCCTCAAGAACTGGGTGGTCAACGTGTTTAGAGAGCGCAGAGCTCTTTCGCTGACACTTAATGACACTAAAACTGCGGTGAACAAACTTCATCAAATTGCGAATGTTGTCGTCGGAGTAATTGTAATCGCTCTGTGGCTACTTATCCTGAACATCGCCACGACGCACTTCTTCGTCTTTCTCAGCTCTCAGATTCTCCTCTTGGTCTTCGTGTTCGGGAACACCTTCAAGACGACTTTCGAAGCCTTAATTTTCCTCTTCGTGATGCATCCCTTTGATGTGGGCGATCGCTGCGAAATCAATGGAGTTCAGATGGTTGTTGAGGAGATGAACATTTTAACGACTATATTTCTGAGATACGATAACCAGAAGATAACGTACCCCAATGTGGTGCTCGCGACACTGCCTATTGGCAATTTCTATCGAAGCCCGGATATGGGAGACAGTATTGATTTCTGTGTTCATGTTTCAACCCCGGTTGAAAAGCTCACGGCCGCGAAAGACAGAGTTATAGCATTCATGGAGGAGAAGAAAAATCACTGGCACTCGGGAGCCCAAGTGGTGATGAAGGATGTGGATGACATGAATAGGCTTAAGATGTCCATTTGGATGACGCACAGAATGAACTTTCAGGACATGGGGACGAAGTTCACGAGGAGGGAGTTGGTGGTTCAAGAGCTAATCAGAGTGCTGAGAGAGCTCGACATTGAATACCGCATGCTGCCGGTGGATGTAAATATCAGAAATATGCCTTCGATGGCCTCCAACCGCCTCCCTTCCACTTGGACCGCCTGCAACTAA

Network for GWHGAAEX017801

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
Module2

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00924.17	MS_channel	646	846	1.30E-19

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0055085	Biological Process	transmembrane transport
GO:0016020	Cellular Component	membrane

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	1.080
SRP064423	SRR2545915	Juvenile tuber	2.740
SRP108465	SRR5643513	five period of Gastrodia elata	4.980
	SRR5643514	five period of Gastrodia elata	1.700
	SRR5643515	five period of Gastrodia elata	4.050
	SRR5643524	five period of Gastrodia elata	1.250
	SRR5643525	five period of Gastrodia elata	3.200
	SRR5643528	five period of Gastrodia elata	1.980
	SRR5643658	five period of Gastrodia elata	5.510
	SRR5643659	five period of Gastrodia elata	1.230
	SRR5643660	five period of Gastrodia elata	0.210
	SRR5643661	five period of Gastrodia elata	1.310
	SRR5643662	five period of Gastrodia elata	1.100
	SRR5643663	five period of Gastrodia elata	0.750
	SRR5643664	five period of Gastrodia elata	1.150
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	4.990
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	7.510
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	6.190
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	4.750
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	3.260
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	1.600
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	4.350
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	5.660
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	6.220
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	4.930
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	7.540
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	7.540
SRP279888	Gastro	Gastrodia elata tuber	1.06
	Juven	Juvenile tuber	0.30
	Mother_Gastro	Mother tuber of Gastrodia elata	0.83
	Mother_Juven	Mother tuber of Juvenile	0.86