Detail information of GWHGAAEX017803/evm.TU.scaffold_87.87
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|433609836|ref|YP_007042205.1| | 2.00E-46 | putative 4-coumarate-CoA ligase 3 [Saccharothrix espanaensis DSM 44229] |
| KOG | KOG1176 | 2.00E-146 | Acyl-CoA synthetase |
| nr | gi|743867143|ref|XP_010905239.1| | 0 | PREDICTED: LOW QUALITY PROTEIN: 4-coumarate--CoA ligase-like 4 [Elaeis guineensis] |
| Swissprot | tr|Q10S72|4CLL4_ORYSJ | 7.00E-167 | 4-coumarate--CoA ligase-like 4 |
| trEMBL | tr|J3LJN2|J3LJN2_ORYBR | 5.00E-168 | Uncharacterized protein {ECO:0000313|EnsemblPlants:OB03G12580.1} |
| TAIR | AT1G20510 | 2.00E-146 | OPC-8:0 CoA ligase1 |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000088 | 3602932 | 3617955 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX017803
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF00501.27 | AMP-binding | 234 | 573 | 7.70E-71 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K10526 | OPCL1 | Metabolic pathways | map01100 |
| Biosynthesis of secondary metabolites | map01110 | ||
| alpha-Linolenic acid metabolism | map00592 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0003824 | Molecular Function | catalytic activity |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 18.310 |
| SRR2545915 | Juvenile tuber | 19.750 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 44.420 |
| SRR5643514 | five period of Gastrodia elata | 33.980 | |
| SRR5643515 | five period of Gastrodia elata | 34.040 | |
| SRR5643524 | five period of Gastrodia elata | 31.380 | |
| SRR5643525 | five period of Gastrodia elata | 29.210 | |
| SRR5643528 | five period of Gastrodia elata | 29.020 | |
| SRR5643658 | five period of Gastrodia elata | 22.660 | |
| SRR5643659 | five period of Gastrodia elata | 53.660 | |
| SRR5643660 | five period of Gastrodia elata | 63.890 | |
| SRR5643661 | five period of Gastrodia elata | 53.700 | |
| SRR5643662 | five period of Gastrodia elata | 46.640 | |
| SRR5643663 | five period of Gastrodia elata | 41.250 | |
| SRR5643664 | five period of Gastrodia elata | 45.100 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 41.240 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 57.760 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 42.640 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 42.050 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 31.040 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 30.380 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 37.630 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 33.570 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 34.020 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 28.820 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 42.280 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 42.280 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 38.32 |
| Juven | Juvenile tuber | 51.52 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 47.82 | |
| Mother_Juven | Mother tuber of Juvenile | 61.62 |