Detail information of GWHGAAEX017804/evm.TU.scaffold_87.90
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|268317750|ref|YP_003291469.1| | 1.00E-50 | AMP-dependent synthetase and ligase [Rhodothermus marinus DSM 4252] |
| KOG | KOG1176 | 3.00E-80 | Acyl-CoA synthetase |
| nr | gi|568839572|ref|XP_006473755.1| | 1.21E-82 | PREDICTED: 4-coumarate--CoA ligase-like 5-like [Citrus sinensis] |
| Swissprot | tr|Q84P21|4CLL5_ARATH | 9.00E-81 | 4-coumarate--CoA ligase-like 5 |
| trEMBL | tr|A0A067H294|A0A067H294_CITSI | 4.00E-83 | Uncharacterized protein {ECO:0000313|EMBL:KDO85040.1} |
| TAIR | AT1G20510 | 3.00E-80 | OPC-8:0 CoA ligase1 |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000088 | 3637884 | 3639131 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX017804
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF00501.27 | AMP-binding | 5 | 50 | 4.30E-16 |
| PF13193.5 | AMP-binding_C | 59 | 134 | 5.50E-20 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K10526 | OPCL1 | Metabolic pathways | map01100 |
| Biosynthesis of secondary metabolites | map01110 | ||
| alpha-Linolenic acid metabolism | map00592 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0003824 | Molecular Function | catalytic activity |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 24.630 |
| SRR2545915 | Juvenile tuber | 36.990 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 74.230 |
| SRR5643514 | five period of Gastrodia elata | 58.640 | |
| SRR5643515 | five period of Gastrodia elata | 59.340 | |
| SRR5643524 | five period of Gastrodia elata | 61.920 | |
| SRR5643525 | five period of Gastrodia elata | 57.290 | |
| SRR5643528 | five period of Gastrodia elata | 72.440 | |
| SRR5643658 | five period of Gastrodia elata | 48.480 | |
| SRR5643659 | five period of Gastrodia elata | 72.650 | |
| SRR5643660 | five period of Gastrodia elata | 61.610 | |
| SRR5643661 | five period of Gastrodia elata | 73.110 | |
| SRR5643662 | five period of Gastrodia elata | 60.310 | |
| SRR5643663 | five period of Gastrodia elata | 61.310 | |
| SRR5643664 | five period of Gastrodia elata | 68.600 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 66.860 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 42.300 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 70.320 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 63.110 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 69.410 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 47.760 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 59.380 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 59.720 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 62.400 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 53.340 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 69.450 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 69.450 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 66.81 |
| Juven | Juvenile tuber | 69.04 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 103.00 | |
| Mother_Juven | Mother tuber of Juvenile | 89.52 |