Detail information of GWHGAAEX017807/evm.TU.scaffold_87.93
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|16077801|ref|NP_388615.1| | 8.00E-91 | amino acid permease YfnA [Bacillus subtilis subsp. subtilis str. 168] |
| KOG | KOG1286 | 0 | Amino acid transporters |
| nr | gi|720062128|ref|XP_010275402.1| | 0 | PREDICTED: cationic amino acid transporter 9, chloroplastic [Nelumbo nucifera] |
| Swissprot | tr|Q9C5D6|CAAT9_ARATH | 0 | Cationic amino acid transporter 9, chloroplastic (Precursor) |
| trEMBL | tr|D7SLW7|D7SLW7_VITVI | 0 | Putative uncharacterized protein {ECO:0000313|EMBL:CBI16645.3} |
| TAIR | AT1G05940 | 0 | cationic amino acid transporter 9 |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000088 | 3787397 | 3813823 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX017807
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module4 |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF13520.5 | AA_permease_2 | 40 | 422 | 1.20E-46 |
| PF13906.5 | AA_permease_C | 487 | 536 | 7.60E-18 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0055085 | Biological Process | transmembrane transport |
| GO:0022857 | Molecular Function | transmembrane transporter activity |
| GO:0016020 | Cellular Component | membrane |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 8.980 |
| SRR2545915 | Juvenile tuber | 6.880 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 13.770 |
| SRR5643514 | five period of Gastrodia elata | 14.730 | |
| SRR5643515 | five period of Gastrodia elata | 14.250 | |
| SRR5643524 | five period of Gastrodia elata | 14.400 | |
| SRR5643525 | five period of Gastrodia elata | 16.350 | |
| SRR5643528 | five period of Gastrodia elata | 33.750 | |
| SRR5643658 | five period of Gastrodia elata | 16.870 | |
| SRR5643659 | five period of Gastrodia elata | 11.430 | |
| SRR5643660 | five period of Gastrodia elata | 14.190 | |
| SRR5643661 | five period of Gastrodia elata | 9.850 | |
| SRR5643662 | five period of Gastrodia elata | 12.750 | |
| SRR5643663 | five period of Gastrodia elata | 10.760 | |
| SRR5643664 | five period of Gastrodia elata | 8.400 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 12.580 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 9.290 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 13.220 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 10.810 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 13.350 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 9.790 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 18.460 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 10.360 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 28.000 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 35.660 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 13.250 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 13.250 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 14.02 |
| Juven | Juvenile tuber | 24.84 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 53.81 | |
| Mother_Juven | Mother tuber of Juvenile | 75.41 |