Detail information of GWHGAAEX017810/evm.TU.scaffold_87.96


Functional Annotation

DatabaseOrthologsE valueAnnotation
COGgi|434394097|ref|YP_007129044.1|2.00E-763-isopropylmalate dehydratase, small subunit [Gloeocapsa sp. PCC 7428]
KOGKOG04543.00E-843-isopropylmalate dehydratase (aconitase superfamily)
nrgi|743778472|ref|XP_010919697.1|6.17E-105PREDICTED: LOW QUALITY PROTEIN: 3-isopropylmalate dehydratase small subunit 3-like [Elaeis guineensis]
Swissprottr|Q9ZW85|LEUD3_ARATH8.00E-853-isopropylmalate dehydratase small subunit 3 (Precursor)
trEMBLtr|A0A096UAZ3|A0A096UAZ3_MAIZE3.00E-102Uncharacterized protein {ECO:0000313|EnsemblPlants:GRMZM5G840002_P02}
TAIRAT2G430903.00E-84Aconitase/3-isopropylmalate dehydratase protein

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000008839540143955167+
Transcript Sequence

Network for GWHGAAEX017810

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00694.18Aconitase_C1211724.50E-17
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K01704leuD, IPMI-S Metabolic pathways map01100
Biosynthesis of secondary metabolitesmap01110
2-Oxocarboxylic acid metabolismmap01210
Biosynthesis of amino acidsmap01230
C5-Branched dibasic acid metabolismmap00660
Cysteine and methionine metabolismmap00270

Gene Ontology

GO term OntologyName

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms52.090
SRR2545915Juvenile tuber31.930
SRP108465SRR5643513five period of Gastrodia elata35.400
SRR5643514five period of Gastrodia elata32.350
SRR5643515five period of Gastrodia elata37.050
SRR5643524five period of Gastrodia elata32.630
SRR5643525five period of Gastrodia elata5.820
SRR5643528five period of Gastrodia elata4.560
SRR5643658five period of Gastrodia elata2.920
SRR5643659five period of Gastrodia elata66.090
SRR5643660five period of Gastrodia elata70.740
SRR5643661five period of Gastrodia elata72.440
SRR5643662five period of Gastrodia elata49.930
SRR5643663five period of Gastrodia elata52.600
SRR5643664five period of Gastrodia elata53.810
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_147.730
SRR6049655Rhizomagastrodiae_C368-T10_good_170.900
SRR6049656Rhizomagastrodiae_C368-T07_good_143.360
SRR6049657Rhizomagastrodiae_C368-T07_good_144.620
SRR6049658Rhizomagastrodiae_C368-T04_good_131.300
SRR6049659Rhizomagastrodiae_C368-T04_good_125.730
SRR6049660Rhizomagastrodiae_C368-T01_good_136.560
SRR6049661Rhizomagastrodiae_C368-T04_good_140.490
SRR6049662Rhizomagastrodiae_C368-T01_good_157.520
SRR6049663Rhizomagastrodiae_C368-T01_good_140.610
SRR6049664Rhizomagastrodiae_C368-T10_good_148.990
SRR6049665Rhizomagastrodiae_C368-T10_good_148.990
SRP279888GastroGastrodia elata tuber 42.61
JuvenJuvenile tuber35.01
Mother_GastroMother tuber of Gastrodia elata 13.09
Mother_JuvenMother tuber of Juvenile 19.34