Detail information of GWHGAAEX017812/evm.TU.scaffold_87.98
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|404498337|ref|YP_006722443.1| | 0 | cation-translocating P-type ATPase [Geobacter metallireducens GS-15] |
| KOG | KOG0205 | 0 | Plasma membrane H+-transporting ATPase |
| nr | gi|672158124|ref|XP_008798791.1| | 0 | PREDICTED: plasma membrane ATPase 1 isoform X2 [Phoenix dactylifera] |
| Swissprot | tr|Q9LY32|PMA7_ARATH | 0 | ATPase 7, plasma membrane-type |
| trEMBL | tr|U5FSH1|U5FSH1_POPTR | 0 | H+-ATPase family protein {ECO:0000313|EMBL:ERP52921.1} |
| TAIR | AT3G60330 | 0 | H(+)-ATPase 7 |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000088 | 3964257 | 3983234 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX017812
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module2 |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF00690.25 | Cation_ATPase_N | 20 | 83 | 4.40E-13 |
| PF00122.19 | E1-E2_ATPase | 137 | 314 | 3.00E-45 |
| PF00702.25 | Hydrolase | 332 | 609 | 6.50E-18 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K01535 | PMA1, PMA2 | Metabolic pathways | map01100 |
| Oxidative phosphorylation | map00190 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0120029 | Biological Process | proton export across plasma membrane |
| GO:0008553 | Molecular Function | hydrogen-exporting ATPase activity, phosphorylative mechanism |
| GO:0000166 | Molecular Function | nucleotide binding |
| GO:0016021 | Cellular Component | integral component of membrane |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 0.520 |
| SRR2545915 | Juvenile tuber | 1.740 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 29.110 |
| SRR5643514 | five period of Gastrodia elata | 45.850 | |
| SRR5643515 | five period of Gastrodia elata | 35.180 | |
| SRR5643524 | five period of Gastrodia elata | 33.460 | |
| SRR5643525 | five period of Gastrodia elata | 1.160 | |
| SRR5643528 | five period of Gastrodia elata | 1.400 | |
| SRR5643658 | five period of Gastrodia elata | 0.960 | |
| SRR5643659 | five period of Gastrodia elata | 0.340 | |
| SRR5643660 | five period of Gastrodia elata | 0.130 | |
| SRR5643661 | five period of Gastrodia elata | 0.450 | |
| SRR5643662 | five period of Gastrodia elata | 0.710 | |
| SRR5643663 | five period of Gastrodia elata | 0.110 | |
| SRR5643664 | five period of Gastrodia elata | 0.100 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 61.490 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 60.560 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 53.240 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 23.840 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 35.920 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 33.720 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 15.870 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 22.990 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 70.380 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 46.600 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 134.460 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 134.460 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 0.47 |
| Juven | Juvenile tuber | 0.42 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 4.04 | |
| Mother_Juven | Mother tuber of Juvenile | 6.32 |