Detail information of GWHGAAEX017814/evm.TU.scaffold_87.100
Functional Annotation
Database | Orthologs | E value | Annotation |
---|---|---|---|
nr | gi|743778496|ref|XP_010919711.1| | 1.46E-66 | PREDICTED: ethylene-responsive transcription factor ERF105-like [Elaeis guineensis] |
Swissprot | tr|Q40478|ERF5_TOBAC | 3.00E-50 | Ethylene-responsive transcription factor 5 |
trEMBL | tr|F6I2P2|F6I2P2_VITVI | 3.00E-53 | Putative uncharacterized protein {ECO:0000313|EMBL:CCB61209.1} |
TAIR | AT5G47230 | 1.00E-41 | ethylene responsive element binding factor 5 |
Location And Transcript Sequence
Scaffold | Start | End | Strand |
---|---|---|---|
GWHAAEX00000088 | 4050715 | 4051870 | + |
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Transcript Sequence | |||
Network for GWHGAAEX017814
Network category | Network | Top300 PCC genelist |
---|---|---|
Coexpression Positive | Network | Top300 PCC genelist |
Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
Module ID | Function Annotation |
---|---|
Module2 |
Protein Structure
Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
---|---|---|---|---|
PF00847.19 | AP2 | 171 | 221 | 5.40E-14 |
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Protein Sequence |
Gene family
Gene family | subfamily |
---|---|
Transcription Factors Family | AP2/ERF-ERF |
KEGG pathway
KO | Enzyme | pathway | mapID |
---|---|---|---|
-- | -- | -- | -- |
Gene Ontology
GO term | Ontology | Name |
---|---|---|
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
GO:0003677 | Molecular Function | DNA binding |
Expression pattern
SRP | Sample | Description | FPKM |
---|---|---|---|
SRP064423 | SRR2545914 | vegetative propagation corms | 0.140 |
SRR2545915 | Juvenile tuber | 0.000 | |
SRP108465 | SRR5643513 | five period of Gastrodia elata | 29.400 |
SRR5643514 | five period of Gastrodia elata | 30.370 | |
SRR5643515 | five period of Gastrodia elata | 35.990 | |
SRR5643524 | five period of Gastrodia elata | 20.100 | |
SRR5643525 | five period of Gastrodia elata | 1.910 | |
SRR5643528 | five period of Gastrodia elata | 1.520 | |
SRR5643658 | five period of Gastrodia elata | 0.740 | |
SRR5643659 | five period of Gastrodia elata | 0.000 | |
SRR5643660 | five period of Gastrodia elata | 0.000 | |
SRR5643661 | five period of Gastrodia elata | 0.000 | |
SRR5643662 | five period of Gastrodia elata | 0.130 | |
SRR5643663 | five period of Gastrodia elata | 0.050 | |
SRR5643664 | five period of Gastrodia elata | 0.430 | |
SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 49.720 |
SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 80.580 | |
SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 47.790 | |
SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 22.910 | |
SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 42.980 | |
SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 32.300 | |
SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 23.780 | |
SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 20.130 | |
SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 54.210 | |
SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 56.650 | |
SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 109.810 | |
SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 109.810 | |
SRP279888 | Gastro | Gastrodia elata tuber | 0.00 |
Juven | Juvenile tuber | 0.00 | |
Mother_Gastro | Mother tuber of Gastrodia elata | 2.10 | |
Mother_Juven | Mother tuber of Juvenile | 0.03 |