Detail information of GWHGAAEX017818/evm.TU.scaffold_87.106
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|449090130|ref|YP_007422571.1| | 5.00E-76 | Enoyl-CoA hydratase/isomerase [Bacillus thuringiensis serovar kurstaki str. HD73] |
| KOG | KOG1679 | 7.00E-107 | Enoyl-CoA hydratase |
| nr | gi|743778534|ref|XP_010919731.1| | 1.83E-136 | PREDICTED: methylglutaconyl-CoA hydratase, mitochondrial-like isoform X2 [Elaeis guineensis] |
| Swissprot | tr|Q39659|MFPA_CUCSA | 4.00E-25 | 3-hydroxyacyl-CoA dehydrogenase |
| trEMBL | tr|M0SZL2|M0SZL2_MUSAM | 6.00E-134 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr5P18330_001} |
| TAIR | AT4G16800 | 7.00E-107 | ATP-dependent caseinolytic (Clp) protease/crotonase family protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000088 | 4254484 | 4269658 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX017818
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF00378.19 | ECH_1 | 72 | 321 | 3.60E-62 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K05607 | AUH | Metabolic pathways | map01100 |
| Cysteine and methionine metabolism | map00270 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0003824 | Molecular Function | catalytic activity |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 15.400 |
| SRR2545915 | Juvenile tuber | 18.750 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 24.990 |
| SRR5643514 | five period of Gastrodia elata | 30.150 | |
| SRR5643515 | five period of Gastrodia elata | 27.460 | |
| SRR5643524 | five period of Gastrodia elata | 27.700 | |
| SRR5643525 | five period of Gastrodia elata | 27.610 | |
| SRR5643528 | five period of Gastrodia elata | 29.220 | |
| SRR5643658 | five period of Gastrodia elata | 29.580 | |
| SRR5643659 | five period of Gastrodia elata | 26.670 | |
| SRR5643660 | five period of Gastrodia elata | 27.770 | |
| SRR5643661 | five period of Gastrodia elata | 27.750 | |
| SRR5643662 | five period of Gastrodia elata | 25.820 | |
| SRR5643663 | five period of Gastrodia elata | 26.140 | |
| SRR5643664 | five period of Gastrodia elata | 24.780 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 21.730 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 31.270 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 30.180 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 22.910 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 17.250 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 19.720 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 20.560 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 20.540 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 27.810 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 25.350 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 34.990 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 34.990 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 23.90 |
| Juven | Juvenile tuber | 31.17 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 14.83 | |
| Mother_Juven | Mother tuber of Juvenile | 19.88 |