Gene detail

Detail information of GWHGAAEX017820/evm.TU.scaffold_87.108

Functional Annotation

Database	Orthologs	E value	Annotation
COG	gi\|375013664\|ref\|YP_004990652.1\|	1.00E-86	DNA/RNA helicase [Owenweeksia hongkongensis DSM 17368]
KOG	KOG2108	1.00E-148	3'-5' DNA helicase
nr	gi\|672142159\|ref\|XP_008794933.1\|	0	PREDICTED: LOW QUALITY PROTEIN: ATP-dependent DNA helicase srs2 [Phoenix dactylifera]
Swissprot	tr\|D1KF50\|SRS2L_ARATH	0	ATP-dependent DNA helicase SRS2-like protein At4g25120
trEMBL	tr\|A0A061G6U3\|A0A061G6U3_THECC	0	P-loop containing nucleoside triphosphate hydrolases superfamily protein isoform 1 {ECO:0000313\|EMBL:EOY22734.1}
TAIR	AT4G25120	1.00E-148	P-loop containing nucleoside triphosphate hydrolases superfamily protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000088	4290898	4372878	+

Transcript Sequence
>GWHTAAEX017820 GCCACTCATTTATAGTCCGTCGCTCTTTTCCGTTCGCCTCTCCTAAAAAGAGCCGTTATTCCGAGGACTCCATCGTTCCCTATCATTGCATCGTCGGGTCTACCTAGGGTTTTACTTGAGGCTTTGCATGCTCAAAGAAAATGTGCCGCCGCTGCCACAAGAGACGGCGGTGGCTGTCATCACAGAGCACCAAAGAGCACGCATCACCCGTAACTTCCGTGCCGCCAAAGCCCTCCTGTCCCGGAAGAGGCCTCTTGACTCGAGTTCTCCTCTTCGTTCCCCAAAATGCAGCTCAGCAGATGATTCAAAAAATCGCGCCTTTTCTGCTGTTAGAATACCGCTTTCAGATGTCCCCAATGGTATAGAGTTTATACATGGATTTTCCACTCCAGTGAAAGCTTCGGGGATTTGCCCGTTTCAAGTTATGAAGGCGACATCGTCTTCGTGCATTCTTGACGATGATTTGAATGATTCGTTTTTGGAGGAAGTAGACACTATATGCGAGCAGCTGTCCTGTGTCAAGAAGGACATAACAAATGCCGAAAGGGAGAGAGACGAAGCAGAGGAAAGCTCTAGTTGTTTCGAAGGGATGAGATGCGATGCGATGCCAAACAAGTTTCACGATTATTTTCAATCCTTGAATGATGCTCAGAGGGAGGCCGCCTGCAGTAATATCTCCGTGCCATTGATGATCGTAGCCGGACCAGGAAGTGGAAAGACATCAACCATGGTTGGACGTTTGCTGACTCTTTTAAAGGAGGGAATATCTCCTGCTAATATATTGGCCATGACTTTCACAACTGCTGCTGCATCTGAGATGAGAGATAGGATTGGAGCTGTTGTGGGAAAGGCAGTTGCTAAGGAGCTCGCAATCAGCACATTTCATTCTTTCTGCTTACAACTTTGCCGTTCGCATGCTGAAAAGTTAGGGCGCACATCTGAATTTCTTATATATGGACATGGACAACAAAGGAGAGCCATTTTAGAGGCACTACGATTGATGAGCTCTGAAGAAAAGAAAGGGCAAGAAACCGATGGATGTGAAGAACTTAATAATGGTGATATTGCAAGCTCTTTGAAAGCAACTTCAAAAAAATGGATGAAACTTGTGACACAAGCCAAGGCATATGGAAAAACTCCCGAAGAGTTGAAAAAGATGGGTGAAAAAATTGGAGCTGCGATTCTGGCAAATTACAATGACATACTTAGAACATGCAATGCTTTGGATTACCATGACTTTATTAATTCTTCAGTGAAGTTGCTGTCAGATTTTCATGAAGTTCGTAAACAGTGCCAGGATACATGGAAGGCAGTTGTAGTTGATGAATTTCAGGACACTAGTTCCATGCAGTATTCTTTATTAAGGATTTTAGCTTCCCATAACCATGTTACTATTGTTGGCGATGAAGATCAGTCTATATTTAGTTTCAATGGAGCTGATGTCAATGGATTTGATTCATTTCGTAGAGACTTTCCAACTCACAAAGAGATAAAGCTGATTAAAAATTATCGCTCCACGCGTTGTATTGTTGAGGCTGCATCTTGTCTTATCAATTACAATGTTAAGCGTGGCCAGAATAAGCACGTTGAGACTGATAATTTTAGTGGCTCTAAAATAACAATTAAGGAATGTCATAATGATGACGCACAATGTTCTTTTGTTTTGGATAAAATATTAGAAATTACATCGTGTGGCTCTACTTCTAAGATGCCTTTTGGCGATATTGCAATCTTATATCGTAGACAGATCTCTGGTAGAGCATTCCAGATGTCGTTCCGGAGCAAAAAGATACCCTTTAATGTCCATGGTGTTGCTTTTTACAGGAAAAAGGTAATAAAAGCAGTCATAGCAATGCTTAAAACTACGTTGCCAGGTTCAGATGATATTCCATTTTGTCAGGCTTTCAAGGCACTCCTTCCTGGTGACAAAGCAGAAAGGAAAATGATGATTGACTATGTAGAAAAAATATCTGGAATTAGGAAAAGCACTTTTCGTTCTACTTCCGCTGAGGTTTTTGATGCGAAGATCTCTGGCACCTTTAAAAGGGCTCAACTCGCCCAAGGGCGCAAGGTTTTGTCCACGCTACTTATGCTTTCAGAGCTTGTTAGAAAGGAACAATCTATATCAGCGGTCATCTCTTATACAGCAAATTTGTTGCCTCAGAGGCACCTTCTTGAACAGCGTGCTATTATTGATGTTGATACTGGCAAATATTTGAATGAAGACAATGACCCAAGATCTGCCCTACAGTACTTATTGGATGATGTCTCCAACTTTCTGTCTTCTCATTATAAAACTGACTGTAACAGTAGTGAAGATAAGGATGGATGTACTCATGTCCTAAAGTCATTTCTGGATTATATATCTATGAGGGAATCAGAAAATTTTAGGTCCAGAAGGCAAGATAATGGTAATTCTATTACGTTGACTACCATTCACCAGTCGAAAGGTCTGGAATGGGACATTGTTTTCATTGTGAAGGCAAATGATGCTGAAATACCTTTACTGAATGAGTTTGATGGTGTTGTGAAGGAAGATGCGATGAAGTTAGAGGAGGAACGAAGATTGTTTTATGTTGCCATGACTCGTGCTCGTAAAAAATTATATATTCTGTACACTACTGTGAACTGTAATTGGATGTTGCTTCAACCATCAAGGTTTTTGAAGGAGATCCCTGGTCATCTTGTTGAGCTCCAGGGTGTGGTACCAGCAAATCAACTAGGGGGCTTGTGCGATGAAAGTGGAACTAATCTTTGTCAATCCAAATGTGCATCATCAGTTGAAGTAATTAAGATTCATGTCAATGAAGAATTTTCAGACAACTCAATCGAGTTGATAGATGCTTGTCTTGTGAATAATTTTTTGAAGAGCTTCAATGTTGAAGAGAGGCTGATTGTTTCACATTTATTTCACCATTGGGCAAAAAAGCAAGCATTTCAACATCCAAAACGTTTGATTGATAAGGTCAACTTTGTGATTGATGAAAGACTAAGGAATAAAATCTACAAACATAAGGATACTATGCGTGCTTTAAAGTCCGGTTTATGTAGTGACGAAGCTTTCCACTACGCCCAATATGTTTTGAGGTGGGAGCAGATTCCTATTTACAAACGCACTCACATAATGAGAGAAAAGCAGGAACATTTCCAGAAACAAAGAGTTGAGAACTCAATGGGATCAGCAGAAGCAACATCCAAACAGTTAGGGTTTCTGAGGAACTTGGGCTGCACCATCGTTCCTACGTCGCGGTTGCATGCGTCCCATCTGATCGAAAAATACAAATCTCTCTGAGGCATTCTTCTCTTGGGTGCAATGCTTTCACAAGTAGCTTATATTATTTGTATGGCGGTGCTTTCCTTGGCTTCCAATGTATCTGCTTGTGTGCATGGCTTTGTACAGGAAAGTGTATTCATTTATTCTCACAATTGTAGAGAGAAATGTCTAGTAATTCAGATGTTCTTTATAACATAAACTATTTGCACATCCTAAATTGGCTGCATATTCAAAAGCATTGGGTGTTGATATTTTCCATTTTTTTGCAATTGAGGTGATTGTTGTATGACCATTAGAATTGTGATAAAAAAGTGATTGTGAATGAATGCATAGGCAAAAGAAAGCTTATGTTCTATGCCTGCCTGTGAATGAAAGCAAAGGCACA

Network for GWHGAAEX017820

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00580.20	UvrD-helicase	171	449	1.30E-61
PF13361.5	UvrD_C	455	831	9.10E-46

Protein Sequence

>GWHPAAEX017820
MLKENVPPLPQETAVAVITEHQRARITRNFRAAKALLSRKRPLDSSSPLRSPKCSSADDSKNRAFSAVRIPLSDVPNGIEFIHGFSTPVKASGICPFQVMKATSSSCILDDDLNDSFLEEVDTICEQLSCVKKDITNAERERDEAEESSSCFEGMRCDAMPNKFHDYFQSLNDAQREAACSNISVPLMIVAGPGSGKTSTMVGRLLTLLKEGISPANILAMTFTTAAASEMRDRIGAVVGKAVAKELAISTFHSFCLQLCRSHAEKLGRTSEFLIYGHGQQRRAILEALRLMSSEEKKGQETDGCEELNNGDIASSLKATSKKWMKLVTQAKAYGKTPEELKKMGEKIGAAILANYNDILRTCNALDYHDFINSSVKLLSDFHEVRKQCQDTWKAVVVDEFQDTSSMQYSLLRILASHNHVTIVGDEDQSIFSFNGADVNGFDSFRRDFPTHKEIKLIKNYRSTRCIVEAASCLINYNVKRGQNKHVETDNFSGSKITIKECHNDDAQCSFVLDKILEITSCGSTSKMPFGDIAILYRRQISGRAFQMSFRSKKIPFNVHGVAFYRKKVIKAVIAMLKTTLPGSDDIPFCQAFKALLPGDKAERKMMIDYVEKISGIRKSTFRSTSAEVFDAKISGTFKRAQLAQGRKVLSTLLMLSELVRKEQSISAVISYTANLLPQRHLLEQRAIIDVDTGKYLNEDNDPRSALQYLLDDVSNFLSSHYKTDCNSSEDKDGCTHVLKSFLDYISMRESENFRSRRQDNGNSITLTTIHQSKGLEWDIVFIVKANDAEIPLLNEFDGVVKEDAMKLEEERRLFYVAMTRARKKLYILYTTVNCNWMLLQPSRFLKEIPGHLVELQGVVPANQLGGLCDESGTNLCQSKCASSVEVIKIHVNEEFSDNSIELIDACLVNNFLKSFNVEERLIVSHLFHHWAKKQAFQHPKRLIDKVNFVIDERLRNKIYKHKDTMRALKSGLCSDEAFHYAQYVLRWEQIPIYKRTHIMREKQEHFQKQRVENSMGSAEATSKQLGFLRNLGCTIVPTSRLHASHLIEKYKSL

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0016787	Molecular Function	hydrolase activity
GO:0005524	Molecular Function	ATP binding

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	6.750
SRP064423	SRR2545915	Juvenile tuber	6.920
SRP108465	SRR5643513	five period of Gastrodia elata	4.070
	SRR5643514	five period of Gastrodia elata	6.800
	SRR5643515	five period of Gastrodia elata	5.340
	SRR5643524	five period of Gastrodia elata	7.110
	SRR5643525	five period of Gastrodia elata	6.660
	SRR5643528	five period of Gastrodia elata	6.590
	SRR5643658	five period of Gastrodia elata	7.010
	SRR5643659	five period of Gastrodia elata	5.560
	SRR5643660	five period of Gastrodia elata	6.770
	SRR5643661	five period of Gastrodia elata	6.570
	SRR5643662	five period of Gastrodia elata	7.050
	SRR5643663	five period of Gastrodia elata	8.410
	SRR5643664	five period of Gastrodia elata	7.210
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	3.280
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	4.780
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	3.850
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	3.730
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	3.390
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	2.680
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	3.940
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	3.870
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	4.900
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	3.910
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	4.330
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	4.330
SRP279888	Gastro	Gastrodia elata tuber	6.68
	Juven	Juvenile tuber	6.45
	Mother_Gastro	Mother tuber of Gastrodia elata	4.85
	Mother_Juven	Mother tuber of Juvenile	6.91