Gene detail

Detail information of GWHGAAEX017824/evm.TU.scaffold_88.2

Functional Annotation

Database	Orthologs	Annotation
nr	gi\|672140460\|ref\|XP_008794033.1\|	PREDICTED: MATH domain-containing protein At5g43560-like isoform X1 [Phoenix dactylifera]
Swissprot	tr\|Q8RY18\|Y5436_ARATH	MATH domain-containing protein At5g43560
trEMBL	tr\|M0S7F0\|M0S7F0_MUSAM	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_Achr2P12590_001}
TAIR	AT1G04300	TRAF-like superfamily protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000095	19473	41966	+

Transcript Sequence
>GWHTAAEX017824 ATGGATGGGAGTTCAACTGAAAATTTTGGAACTGGTGGTATGTTGTCTCAAGCGGAGGGCATATCGGCTGGGCAACGGTGTCAATCTGTCGATTCTCTTGCAGAATGGCACTCCAGCGAGCAGTTGGAAAATGGGACACCTTCCACTTCGCCACCTTATTGGGATACGGACGACGACGATGATGATTGTGGACCTAGACCTTCTGAGCTTTATGGAAAATTTACTTGGAAGATTGAAAATTATTCACAAATTAATAAACGGGAGCTGCGTAGCAATGCATTTGAGGTTGGAGGTTACAAATGGTATATTTTAATATATCCACAAGGTTGTGACGTCTGTAATCATCTATCTTTGTTTCTTTGTGTTGCCAATCATGACAAACTTCTTCCAGGATGGAGCCACTTCGCACAGTTTACAATAGCTGTTGTAAATAAAGATCCAAAGAAATCCAAGTTCTCTGATACCTTGCATCGTTTCTGGAAAAAAGAGCATGACTGGGGTTGGAAAAAATTCATGGAACTCACTAAGGTGGAAGATGGTTTTGTAAATAATGAAACTCTTGTGATCAAAGCTCAAGTTCAAGTAATTAGGGAGAAAGCACACCGCCCTTTTCGTTGCCTTGACTGCCAGTACAGAAGAGAATTAGTTCGGGTATATCTTTCAAATGTTGAGCAAATTTGTCGGCGCTTTTTTGAAGACAGGAAAAATAAATTAAGCAAGCTGATTGAAGATAAAGTGAGATGGTCAAGTTTCTGTTCCTTTTGGTTAGGGATTGACCAAAATTCAAGAAGGCGAATATCAAGAGACAAGTTAGATACAATTTTGAGAGTAGTTGTAAAGCACTTTTTTGTAGAGAAAGAAGTTACATCTACTTTAGTTATGGATTCTCTTTATAGTGGTCTGAAGGCTCTTGAATGCATAAATAAGAACAAGAAAGAAGCACAGAGGATAGAAATGGAGGATTCACCTGCGCCTATGGTTCGAATCGAAAAAGATATGTTTGTTTTGGCTGATGATGTTATATTACTGCTCGAGAGAGTAGCTTCTGAACCCTTACCTGCCATGTCTTTGCCTCCTAAAGATGACAAAGTTTCCCAGAATCGTACAAAGGAAGGAAGTTCTGCTGATGATTTTAAGGATTCCATTGAACGGGATGAGAGACGCCTTACTGAGCTGGGACGGCGAACAGTGGAAATTTTTGTTCTAGCTCATATTTTTAGCAGTAGAATTGAAGTTGCTTACCAGGAGGCTGTTGCTCTAAAGAGACAAGAGGAACTTATTCGGGAGGAGGAAGCTGCTGGCCAAGCTGAGCATGAACTCAAGGCAAAGCGTGCTGCTGCTGAGAAAGACAAACGTGCCAAGAAAAAACAGGGCAAGCAGAAGCGTAATAATCGTAAGAACAAGGATAAGCAGAGGGATTTAAAGTCGGATTCTGTATTTAATGACAAGAATCAGGAAGAGAAGTCTCTGGATGACGTAGTGTCCAGGAAGTTGTCCATCAAACATGTGAATGCAATGAATAATGAGAGAATGGACACACCAGAAGATGGATCAGATGTTTCTTGCAACGGTGATGATGTTACCGCACCTACTTATCCTGATTTAGAGGATCCAGATAGCAGTTCAAGGAATTGGTACACAGATGCATCGGAACTTCATCCTTCTGTGGAAGCTAGTGCAAGTGATTTGCAAAATTATCGAGCAGAGAAGACAAACCTTGGCATGGATGACAGCTCATCAACTTGTTCAACTGATTCAGTTCCTTCAGTTATTGCAAATGGATATGCCGTGCTTCTGAAAAGCATCAAAATTTCACCAAACTTGGAAAAAAATGATGCTGGAAAACGCTTTGCAAGCCGTGCCGGTGAAATTCATGACAATTATTCATCGGCGCCCCTGGAGTTGGAAGGAGGTGATGCTTGTCAGAAGCATTTGAGACAATTGCATGAATGTCATTCGGTGGGAAAGCATGAACCGGCTGCTATCCTACTAAAGAAAACCTCTAAAGCTCACAGCGATGCAGAAAAGCTGCCAAATATCAGGACATCTGAAGCATCCTCTGCTTCAGCCGAAACCGGGAGAAAGATGCAGACACTTGTGCAACCGGCAAAGCAATCAGCACAGAACAGCACAACCGGGTCTATCGCCACAATGACTTCATCTACAGTTCTATCCTCTTCCGCCAAAGAGCCACCGTCATCAAGTACCCCGAATGTTCCCAAGAGGTCTGCTGCTCAATCAGTGAAGTCACTACATTCTTCTGCTTCAAAATCTGAAGCTCAAAGACCCATTGCTATTCCTGCCGCAAAGAGCAGTGCCGCCCAACCGGCCACCCCGATCTCGAGACCTTCCAGTGCCCCTCTCATCCCCCTTACACCAAGGCCAATCACGCCGACAGTCTCGGCTGCTCCAGTCACCCCTCTCCTCCCGCGCTCCGCAAGCGCTATTGGCCGGTTGGCGGCGGATCCGTCTCTATCCTCCCCAACCTATGTCCCTCAGTCCTATCGCAATGCTATCATTGGGAAGTCCGCTGCATGTTCTACCCCTACTGGGTTTTCCCAGTCAGCTTCCACTTATTCAAGCCAATCAGCTTCTTCGTCCACTTCCACATCGATGTATCCGCCTCCGTCAAGTTCCCGAAAAGAGCAGCAGATGGCCTCGAGACCTGGACTCACCTTTGGCTCCATTAAGCCTGACGCATTACCCATCTCGCATCAACTGAGAGATGATCACCTGTATCATGCATCCACTTCCGCCACAAACATAGACCCCAGTAACTCGAATCTTCCGAGCGGTGTAGAGAGGGTTGGCGTGGTAGACGAGTTCCCTCACCTTGATATTATCAATGATTTGCTCAATGAGGAGCATAGCATAATGGGAGAGGAAGCAAGCATAAGCAATCAGTACTACTACCACCACCCCCGCCGCCACCCTCATCAGCAGCAGCAGCGTCATTCCTTCCAACGCCAGTATTCCTTCGTCGGCGATGCATCTTCTTCTGCCGACTTCATTTTGCTGAATGGTCTGTCAGGAAGATTCGACCAAGGTGATCAGTATTATGATGATGACTACCTCAGCCTCTATGGCGGCCCTTCTGGCCGACCTTTGGAAGGACTGCGGGATAGCCATTTCGCTCCAGTGGATCTTTCGGAGGTGTACGTTAACTGCCAGATGGACGGCTTGCTTCAGAGCCAGTGGCCTTACGGCCACACAGATCTATCGCTTTTGAATCTCAGCAGCGCTGATGGAGGCATGTACTCATACCATCATAACAACCCGCCGTCGGATTATGCCAATCTGAGAAGTGGGATGAACGGGTACGGCTTGTATCGGCCATGA

Network for GWHGAAEX017824

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00917.25	MATH	78	195	4.10E-26

Protein Sequence

>GWHPAAEX017824
MDGSSTENFGTGGMLSQAEGISAGQRCQSVDSLAEWHSSEQLENGTPSTSPPYWDTDDDDDDCGPRPSELYGKFTWKIENYSQINKRELRSNAFEVGGYKWYILIYPQGCDVCNHLSLFLCVANHDKLLPGWSHFAQFTIAVVNKDPKKSKFSDTLHRFWKKEHDWGWKKFMELTKVEDGFVNNETLVIKAQVQVIREKAHRPFRCLDCQYRRELVRVYLSNVEQICRRFFEDRKNKLSKLIEDKVRWSSFCSFWLGIDQNSRRRISRDKLDTILRVVVKHFFVEKEVTSTLVMDSLYSGLKALECINKNKKEAQRIEMEDSPAPMVRIEKDMFVLADDVILLLERVASEPLPAMSLPPKDDKVSQNRTKEGSSADDFKDSIERDERRLTELGRRTVEIFVLAHIFSSRIEVAYQEAVALKRQEELIREEEAAGQAEHELKAKRAAAEKDKRAKKKQGKQKRNNRKNKDKQRDLKSDSVFNDKNQEEKSLDDVVSRKLSIKHVNAMNNERMDTPEDGSDVSCNGDDVTAPTYPDLEDPDSSSRNWYTDASELHPSVEASASDLQNYRAEKTNLGMDDSSSTCSTDSVPSVIANGYAVLLKSIKISPNLEKNDAGKRFASRAGEIHDNYSSAPLELEGGDACQKHLRQLHECHSVGKHEPAAILLKKTSKAHSDAEKLPNIRTSEASSASAETGRKMQTLVQPAKQSAQNSTTGSIATMTSSTVLSSSAKEPPSSSTPNVPKRSAAQSVKSLHSSASKSEAQRPIAIPAAKSSAAQPATPISRPSSAPLIPLTPRPITPTVSAAPVTPLLPRSASAIGRLAADPSLSSPTYVPQSYRNAIIGKSAACSTPTGFSQSASTYSSQSASSSTSTSMYPPPSSSRKEQQMASRPGLTFGSIKPDALPISHQLRDDHLYHASTSATNIDPSNSNLPSGVERVGVVDEFPHLDIINDLLNEEHSIMGEEASISNQYYYHHPRRHPHQQQQRHSFQRQYSFVGDASSSADFILLNGLSGRFDQGDQYYDDDYLSLYGGPSGRPLEGLRDSHFAPVDLSEVYVNCQMDGLLQSQWPYGHTDLSLLNLSSADGGMYSYHHNNPPSDYANLRSGMNGYGLYRP

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0005515	Molecular Function	protein binding

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	42.370
SRP064423	SRR2545915	Juvenile tuber	33.970
SRP108465	SRR5643513	five period of Gastrodia elata	24.130
	SRR5643514	five period of Gastrodia elata	23.870
	SRR5643515	five period of Gastrodia elata	24.770
	SRR5643524	five period of Gastrodia elata	24.870
	SRR5643525	five period of Gastrodia elata	23.410
	SRR5643528	five period of Gastrodia elata	21.640
	SRR5643658	five period of Gastrodia elata	22.180
	SRR5643659	five period of Gastrodia elata	46.630
	SRR5643660	five period of Gastrodia elata	53.960
	SRR5643661	five period of Gastrodia elata	26.880
	SRR5643662	five period of Gastrodia elata	54.280
	SRR5643663	five period of Gastrodia elata	49.530
	SRR5643664	five period of Gastrodia elata	56.130
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	31.760
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	38.110
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	31.570
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	37.970
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	45.150
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	48.690
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	35.790
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	44.310
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	32.000
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	30.870
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	28.900
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	28.900
SRP279888	Gastro	Gastrodia elata tuber	41.45
	Juven	Juvenile tuber	44.48
	Mother_Gastro	Mother tuber of Gastrodia elata	39.79
	Mother_Juven	Mother tuber of Juvenile	52.72